View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17357_low_27 (Length: 283)
Name: NF17357_low_27
Description: NF17357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17357_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 8357836 - 8358102
Alignment:
| Q |
1 |
tccatccaaattgcaaaacaatcctttgtctgttattcgtaccaagcaattccatgacattcgcaataggtacatggaacttcttcaaaaactaacatca |
100 |
Q |
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| T |
8357836 |
tccatcaaaattacaaaacaatcctttgtctgttattagtacaatgcaattccatgacattcgcaataggtacatggaacttcttcaaaaactaacatca |
8357935 |
T |
|
| Q |
101 |
aagagaaggaaaattcaaagaagattaacattgattagtgtttgcaagaaagttggaggaattgctcttattacatcacatgctgctattcttattgctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8357936 |
aagagaaggaaaattcaaagaagattaacattgattagtgtttgcaagaaagttggaggaattgctcttgttacatcacatgctgctattcttattgctt |
8358035 |
T |
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| Q |
201 |
tattagtggtttcttttcatagtgttgttgggttagtggctgcaccaagtattgtaggtggtttagt |
267 |
Q |
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| T |
8358036 |
tattagtggtttcttttcatagtgttgttgggttagtggctgcaccaagtattgtaggtggtttagt |
8358102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 14 - 264
Target Start/End: Complemental strand, 28593736 - 28593486
Alignment:
| Q |
14 |
caaaacaatcctttgtctgttattcgtaccaagcaattccatgacattcgcaataggtacatggaacttcttcaaaaactaacatcaaagagaaggaaaa |
113 |
Q |
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|||||||| |||||||| |||||| |||| | ||||||| || | |||| |||||||||||| ||||||||||| | ||||||||||||||||| ||||| |
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| T |
28593736 |
caaaacaaccctttgtccgttattagtacaatgcaattcgataatattcacaataggtacattgaacttcttcatagactaacatcaaagagaaagaaaa |
28593637 |
T |
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| Q |
114 |
ttcaaagaagattaacattgattagtgtttgcaagaaagttggaggaattgctcttattacatcacatgctgctattcttattgctttattagtggtttc |
213 |
Q |
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| T |
28593636 |
ttcaaagaagattagcattgattagggtttgcaagaaagttggaggaattgctcttgttacatcacatggtgccattcttattgctttattagtggtttc |
28593537 |
T |
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| Q |
214 |
ttttcatagtgttgttgggttagtggctgcaccaagtattgtaggtggttt |
264 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||| |||| |
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| T |
28593536 |
ttttcatagtgtagtagggttagtggctgcaccaagtattgtaggtagttt |
28593486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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