View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17357_low_29 (Length: 258)

Name: NF17357_low_29
Description: NF17357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17357_low_29
NF17357_low_29
[»] scaffold0016 (2 HSPs)
scaffold0016 (1-245)||(53873-54115)
scaffold0016 (37-91)||(37607-37661)
[»] chr6 (6 HSPs)
chr6 (1-93)||(21221667-21221759)
chr6 (23-111)||(21140109-21140194)
chr6 (118-202)||(21221835-21221922)
chr6 (43-91)||(21245957-21246005)
chr6 (1-35)||(21181521-21181555)
chr6 (37-91)||(21200685-21200739)
[»] scaffold1526 (1 HSPs)
scaffold1526 (203-245)||(1262-1304)
[»] chr4 (1 HSPs)
chr4 (203-245)||(15707358-15707400)
[»] chr2 (1 HSPs)
chr2 (203-245)||(3378229-3378271)
[»] scaffold0642 (1 HSPs)
scaffold0642 (203-245)||(4102-4144)
[»] scaffold0345 (1 HSPs)
scaffold0345 (203-245)||(14014-14056)
[»] scaffold0105 (1 HSPs)
scaffold0105 (203-245)||(24925-24967)
[»] chr8 (1 HSPs)
chr8 (203-245)||(44495504-44495546)


Alignment Details
Target: scaffold0016 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 54115 - 53873
Alignment:
Q  1 ctattctttacaacttttaacttgttcaactttgggcttcattgcatagaataaatgttatttagtacaaaatgtctgagatgaaattgaatattactaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  54115 ctattctttacaacttttaacttgttcaactttgggcttcattgcttagaataaatgttatttagtacaaaatgtctgagatgaaattgaatatta--aa 54018  T
Q  101 gtcttagtaaatgagtactgaccaaattaccaaagaggatcaaaacatttaagataggaataatttgtggctgatgatgttgctcctaatagtgatacaa 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54017 gtcttagtaaatgagtactgacaaaattaccaaagaggatcaaaacatttaagataggaataatttgtggctgatgatgttgctcctaatagtgatacaa 53918  T
Q  201 tacttactttctctctaacatcattccaatccggtccttcttctc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  53917 tacttactttctctctaacatcattccaatccggtccttcttctc 53873  T

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Target: scaffold0016; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 37661 - 37607
Alignment:
Q  37 cttcattgcatagaataaatgttatttagtacaaaatgtctgagatgaaattgaa 91  Q
    |||| ||||||||||||| |||||||||| ||||||| |||  ||||||||||||    
T  37661 cttcgttgcatagaataattgttatttagaacaaaatttctacgatgaaattgaa 37607  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 21221667 - 21221759
Alignment:
Q  1 ctattctttacaacttttaacttgttcaactttgggcttcattgcatagaataaatgttatttagtacaaaatgtctgagatgaaattgaata 93  Q
    ||||||||||||||||| ||||||||||| |||| ||||  ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  21221667 ctattctttacaactttgaacttgttcaattttgagctttgttgcatagaataattgttatttagaacaaaatgtctgagatgaaattgaata 21221759  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 21140109 - 21140194
Alignment:
Q  23 tgttcaactttgggcttcattgcatagaataaatgttatttagtacaaaatgtctgagatgaaattgaatattactaagtcttagtaaa 111  Q
    ||||||| |||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||   ||||||||||||||    
T  21140109 tgttcaattttgggcttcgttgcatagaataattgttatttagaacaaaatgtctgagatgaaattgaatat---taagtcttagtaaa 21140194  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 202
Target Start/End: Original strand, 21221835 - 21221922
Alignment:
Q  118 ctgaccaaattaccaaagaggatcaa---aacatttaagataggaataatttgtggctgatgatgttgctcctaatagtgatacaata 202  Q
    |||| |||||||||||||||||||||   |||| | || |||||||| || |||||||||||||||||||||||||||||||| ||||    
T  21221835 ctgaacaaattaccaaagaggatcaagaaaacactgaaaataggaattatctgtggctgatgatgttgctcctaatagtgatataata 21221922  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 21246005 - 21245957
Alignment:
Q  43 tgcatagaataaatgttatttagtacaaaatgtctgagatgaaattgaa 91  Q
    |||||||||||| |||||||||  ||||||||| |||||||||||||||    
T  21246005 tgcatagaataattgttatttataacaaaatgtatgagatgaaattgaa 21245957  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 21181521 - 21181555
Alignment:
Q  1 ctattctttacaacttttaacttgttcaactttgg 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  21181521 ctattctttacaacttttaacttgttcaattttgg 21181555  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 21200685 - 21200739
Alignment:
Q  37 cttcattgcatagaataaatgttatttagtacaaaatgtctgagatgaaattgaa 91  Q
    |||| ||||||| | ||| |||||||||| ||||||||||| |||||||||||||    
T  21200685 cttcgttgcataaagtaattgttatttagaacaaaatgtctaagatgaaattgaa 21200739  T

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Target: scaffold1526 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1526
Description:

Target: scaffold1526; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 1304 - 1262
Alignment:
Q  203 cttactttctctctaacatcattccaatccggtccttcttctc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  1304 cttactttctctctaacatcattccaatccggtccttcttctc 1262  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 15707358 - 15707400
Alignment:
Q  203 cttactttctctctaacatcattccaatccggtccttcttctc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  15707358 cttactttctctctaacatcattccaatccggtccttcttctc 15707400  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 3378229 - 3378271
Alignment:
Q  203 cttactttctctctaacatcattccaatccggtccttcttctc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  3378229 cttactttctctctaacatcattccaatccggtccttcttctc 3378271  T

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Target: scaffold0642 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 4102 - 4144
Alignment:
Q  203 cttactttctctctaacatcattccaatccggtccttcttctc 245  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  4102 cttactttctctctaacatcattccaatccggttcttcttctc 4144  T

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Target: scaffold0345 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 14014 - 14056
Alignment:
Q  203 cttactttctctctaacatcattccaatccggtccttcttctc 245  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  14014 cttactttctctctaacatcattccaatccggttcttcttctc 14056  T

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Target: scaffold0105 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 24967 - 24925
Alignment:
Q  203 cttactttctctctaacatcattccaatccggtccttcttctc 245  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  24967 cttactttctctctaacatcattccaatccggttcttcttctc 24925  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 44495504 - 44495546
Alignment:
Q  203 cttactttctctctaacatcattccaatccggtccttcttctc 245  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  44495504 cttactttctctctaacatcattccaatccggttcttcttctc 44495546  T

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