View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17357_low_3 (Length: 708)
Name: NF17357_low_3
Description: NF17357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17357_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 570; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 16 - 658
Target Start/End: Complemental strand, 44263921 - 44263278
Alignment:
| Q |
16 |
atgaacacacaacaaatggagatnnnnnnnctgaaggaagatgtttacaggctgcagagtcagtgcaatgtcatgcaagcacagatggacaagatggctg |
115 |
Q |
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| T |
44263921 |
atgaacacacaacaaatggagataaaaaaactgaaggaagatgtttacaggctgcagagtcagtgcaatgtcatgcaagcacagatggacaagatggctg |
44263822 |
T |
|
| Q |
116 |
agaagaagaaaagtttcttcaaatggaagaaacttgcttttagtaaaagcatcggagagatggagaatgttgaacaagatgaagctgaaactgaatttgg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44263821 |
agaagaagaaaagtttcttcaaatggaagaaacttgcttttagtaaaagcatcggagagatggagaatgttgaacaagatgaagctgaaactgaatttgg |
44263722 |
T |
|
| Q |
216 |
atttggaaggcaaacacctatggacatgaaaactagtactgtggtcaaaagtaggactcctcataagtggagaaaatctatgtcctgatagagaggcttt |
315 |
Q |
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| T |
44263721 |
atttggaaggcaaacacctatggacatgaaaactagtactgtggtcaaaagtaggactcctcataagtggagaaaatctatgtcctgatagagaggcttt |
44263622 |
T |
|
| Q |
316 |
caatgttaa-taacaaaatnnnnnnnttaaggtgtcatataagtgtttattggagttaagaatttggaaatgatgtaagatagagacatattttggaata |
414 |
Q |
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|| |||||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44263621 |
cattgttaaataaaaaaataaaaaaattaaggtgtcatataagtgtttattggagataagaatttggaaatgatgtaagatagagacatattttggaata |
44263522 |
T |
|
| Q |
415 |
aattcaataaagatgtgggggtacaacttggactacataactcaactttgtatgcaacagttagacagtgctacgttattgtgaatatcactcattttta |
514 |
Q |
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| T |
44263521 |
aattcaataaagatgtgggggtacaacttggactgcataactcagctttgtatgcaacagttagacagtgctacgttattgtgaatattactcattttta |
44263422 |
T |
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| Q |
515 |
atgtaccaatttgcttttaatatgatttgtttattatcttctagtaaaatgttgtttggtatcttaaagtttgttttgtattgtgtcgtaggagtgtatc |
614 |
Q |
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| T |
44263421 |
atgtaccaatttgcttttaatatgatttgtttattatcttctagtaaaatgttgtttggtatcttaaagtttgttttgtattgtgtcgtaggagtgtatc |
44263322 |
T |
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| Q |
615 |
aaaatcaccccaagagtgttctaggactgtgtaagttcttcatt |
658 |
Q |
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| T |
44263321 |
aaaatcaccccaagagtgttctaggactgtgtaagttcttcatt |
44263278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 309 - 443
Target Start/End: Complemental strand, 44260823 - 44260686
Alignment:
| Q |
309 |
aggctttcaatgttaataacaaaatnnnnnnnttaaggtgtcatataagtgtttattggagtta---agaatttggaaatgatgtaagatagagacatat |
405 |
Q |
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| T |
44260823 |
aggctttcattgttaataacaaaataaaaaa-ttaagttgttgtataactgtttattggagttataaagactttggaaataatgtaagatagtgacctac |
44260725 |
T |
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| Q |
406 |
tttggaataaattcaataaagatgtggggg-tacaactt |
443 |
Q |
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| T |
44260724 |
tttggaataacttcaataaagatgcgggggatacaactt |
44260686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 661 - 694
Target Start/End: Complemental strand, 44263254 - 44263221
Alignment:
| Q |
661 |
aagactatggaataattctattctacattgaaac |
694 |
Q |
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| T |
44263254 |
aagactatggaataattctattctacattgaaac |
44263221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 9e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 46 - 229
Target Start/End: Complemental strand, 56165629 - 56165443
Alignment:
| Q |
46 |
ctgaaggaagatgtttacaggctgcagagtcagtgcaatgtcatgcaagcacagatggacaagatggctgagaagaagaaaagtttcttcaaatggaaga |
145 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| ||||||| |||||||||| |
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| T |
56165629 |
ctgaaggaagatgtttacaggctgcaaagtcagtgcaatgtcatgcaagcacatatggaaaagatggttgagaagaagaaaggtttctttaaatggaaga |
56165530 |
T |
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| Q |
146 |
aacttgcttttagtaaaagcat---cggagagatggagaatgttgaacaagatgaagctgaaactgaatttggatttggaaggcaaa |
229 |
Q |
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| T |
56165529 |
aacttgcttttagtaaaagcattggtggcgagatggagaatgttgaacaacatgaagctgaaactgaatttcgatttggaaggcaaa |
56165443 |
T |
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Back To:
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