View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17357_low_30 (Length: 257)
Name: NF17357_low_30
Description: NF17357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17357_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 241
Target Start/End: Complemental strand, 19842564 - 19842333
Alignment:
| Q |
10 |
attattctgattaagaaatcaaataaatagttgagaccactactaagtagaatcttagattgattaattgttgtggtcaatnnnnnnncctactactcaa |
109 |
Q |
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| T |
19842564 |
attattctgattaagaaatcgaataaatagttgagaccactactaagtagaatcttagattgattaattgttgtggtcaataaaaaaacctactactcaa |
19842465 |
T |
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| Q |
110 |
gtcttttcgatagtattagaattagaaccgatcttctcaattgatatgcaaacactttttcttaaatatcaacttaattagtcttaattaatcaatccaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19842464 |
gtcttttcgatagtattagaattagaaccgatcttctcaattgatatgcaaacactttttcttaaatatcaacttaattagtcttaattaatcaatccaa |
19842365 |
T |
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| Q |
210 |
caggaaactcgtcatctttttagtgtgtttgt |
241 |
Q |
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| T |
19842364 |
cgggaaactcgtcatctttttagtgtgtttgt |
19842333 |
T |
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