View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17357_low_34 (Length: 218)
Name: NF17357_low_34
Description: NF17357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17357_low_34 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 19137374 - 19137306
Alignment:
| Q |
98 |
gctccatgagatcagatggaggagaggagtgaataataatgtcaatatcagaagcagcccctaactttg |
166 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19137374 |
gctccatgagatcaaatggaggaggggagtgaataataatgtcaatatcagaagcagcccctaactttg |
19137306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 20736773 - 20736705
Alignment:
| Q |
98 |
gctccatgagatcagatggaggagaggagtgaataataatgtcaatatcagaagcagcccctaactttg |
166 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20736773 |
gctccatgagatcaaatggaggaggggagtgaataataatgtcaatatcagaagcagcccctaactttg |
20736705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 189 - 218
Target Start/End: Original strand, 290356 - 290385
Alignment:
| Q |
189 |
attattagggttaattaagtttttagtccc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
290356 |
attattagggttaattaagtttttagtccc |
290385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 166
Target Start/End: Complemental strand, 31789004 - 31788892
Alignment:
| Q |
53 |
gctacgcccttgggaaataagttcccatagtgtcggtccttaacagctccatgagatcagatggaggagaggagtgaataataatgtcaatatcagaagc |
152 |
Q |
| |
|
|||| ||||| ||||||||||||||| | |||||| |||||| ||| | | ||| || | ||||||||| |||||||||| ||||||| ||| ||||| |
|
|
| T |
31789004 |
gctaggccctagggaaataagttccc-tggtgtcgttccttagcaggccaaggaggtcggttggaggagaagagtgaataacaatgtcatcatctgaagc |
31788906 |
T |
|
| Q |
153 |
agcccctaactttg |
166 |
Q |
| |
|
||| ||||| |||| |
|
|
| T |
31788905 |
agctcctaattttg |
31788892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 189 - 218
Target Start/End: Complemental strand, 20510347 - 20510318
Alignment:
| Q |
189 |
attattagggttaattaagtttttagtccc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
20510347 |
attattagggttaattaagtttttagtccc |
20510318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 218
Target Start/End: Complemental strand, 16539546 - 16539518
Alignment:
| Q |
190 |
ttattagggttaattaagtttttagtccc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
16539546 |
ttattagggttaattaagtttttagtccc |
16539518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University