View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17357_low_4 (Length: 551)
Name: NF17357_low_4
Description: NF17357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17357_low_4 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 16 - 532
Target Start/End: Complemental strand, 54635 - 54120
Alignment:
| Q |
16 |
caaaaacctacctagtcaggtatattgtgatgtacattagcacaattttaatgcaataacgctaccacaaactctttaaactatgtctagcacaattttc |
115 |
Q |
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| T |
54635 |
caaaaacctacctagtcaggtatattgtgatgtacattagcacaattttaatgcaataacgctaccacaaactctttaaactatgtctagcacaattttc |
54536 |
T |
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| Q |
116 |
ggatatactattaagttaagtacgtaaattggttggtttgtgtatttgtccttgggatgacaagtatctataatggcacgaaaggttcaaaggattcaag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
54535 |
ggatatactattaagttaagtacgtaaattggttggtttgtgtatttgtccttgggatgacaagtatctataatggcaagaaaggttcaaaggattcaag |
54436 |
T |
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| Q |
216 |
ttaataatcaattgcaaatccttctgttaaacggaaagaaaaaataattatgaattcttagttttttcagtaaattgattgtcgggaaaatccaacaaga |
315 |
Q |
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| T |
54435 |
ttaata-tcaattgcaaatccttctgttaaacggaaagaaaaaataattatgaattcttagttttttcagtaaattgattgtcgggaaaatccaacaaga |
54337 |
T |
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| Q |
316 |
aaaatattattaataacaataatttatatcttattgaaaattcacaaaaatcaattcaccaaaagttattactacacactatgagttattggttcagaac |
415 |
Q |
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| T |
54336 |
aaaatattattaataacaataatttatatcttattgaaaattctcaaaaatcaattcaccaaaagttattactacacactgtgaattattggttcagaac |
54237 |
T |
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| Q |
416 |
aaattaattgactttgaggtatagaaagatctttttataggtaaatcttcctctttgtttatcaaccccttcgatgcgggacttttgacaggagtctaat |
515 |
Q |
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| T |
54236 |
aaattaattggctttgaggtatagaagggtctttttataggtaaatcttcctctttatttatcaaccccttcgatgtgggacttttgacaggagtctaat |
54137 |
T |
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| Q |
516 |
ttatatgtcttgataca |
532 |
Q |
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| T |
54136 |
ttatatgtcttggtaca |
54120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 6e-54; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 199 - 385
Target Start/End: Original strand, 21139385 - 21139571
Alignment:
| Q |
199 |
ggttcaaaggattcaagttaataatcaattgc-aaatccttctgttaaacggaaagaaaaaataattatgaattcttagttttttcagtaaattgattgt |
297 |
Q |
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| T |
21139385 |
ggttcaaaggattcaagttgataatcaattggtaaatccttctattaaacagaagaaaaaaatgattatggattcttagttttttcagtaaattgaatgt |
21139484 |
T |
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| Q |
298 |
cgggaaaatccaacaagaaaaatattattaataacaataatttatatcttattgaaaattcacaaaaatcaattcaccaaaagttatt |
385 |
Q |
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| T |
21139485 |
tgaaaaaatcaaacaagaaaaatattattaataacaataatttatctcttattg-aaattctcaataatcaattcaccaaaagttatt |
21139571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 195 - 389
Target Start/End: Original strand, 21221296 - 21221481
Alignment:
| Q |
195 |
gaaaggttcaaaggattcaagttaataatcaattgcaaatccttctgttaaacggaaagaaaaaataattatgaattcttagttttttcagtaaattgat |
294 |
Q |
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| T |
21221296 |
gaaaggttcaaagaatttatgttgataatcagttgcaaatccttctg--------aaagaaaaaataattatggattcttagttttttcagtaaattgat |
21221387 |
T |
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| Q |
295 |
tgtcgggaaaatccaacaagaaaaatattattaataacaataatttatatcttattgaaaattcacaaaaatcaattcaccaaaagttattacta |
389 |
Q |
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| T |
21221388 |
tgttgaaaaaatcaaacaagaaaaatattattaacaacaataatttatctcttattg-agattctcaaaaatcaattcaccaaaagttattacta |
21221481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 401 - 531
Target Start/End: Original strand, 21221522 - 21221650
Alignment:
| Q |
401 |
ttattggttcagaacaaattaattgactttgaggtatagaaagatctttttataggtaaatcttcctctttgtttatcaaccccttcgatgcgggacttt |
500 |
Q |
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| T |
21221522 |
ttattggttcagaacagattagttggctttgaggtatagaagcgtctttttataggtaaatctt--tctttgtttttcagccccttcgatgtgggacttt |
21221619 |
T |
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| Q |
501 |
tgacaggagtctaatttatatgtcttgatac |
531 |
Q |
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| T |
21221620 |
tgacaggagtctattttatatatcttgatac |
21221650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 401 - 527
Target Start/End: Original strand, 21139616 - 21139745
Alignment:
| Q |
401 |
ttattggttcagaacaaattaattgactttgaggtatagaaagatc---tttttataggtaaatcttcctctttgtttatcaaccccttcgatgcgggac |
497 |
Q |
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||||| |||||||||| ||||||| || ||||||||||| | || ||||||||||||||||||| |||| ||| ||| ||||||||||| || || |
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| T |
21139616 |
ttattagttcagaacagattaattagctctgaggtatagacgggtcttttttttataggtaaatcttcgtcttaatttttcatccccttcgatgtggaac |
21139715 |
T |
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| Q |
498 |
ttttgacaggagtctaatttatatgtcttg |
527 |
Q |
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| T |
21139716 |
ttttgacaggagtctattttatatgtcttg |
21139745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 21221229 - 21221278
Alignment:
| Q |
107 |
acaattttcggatatactattaagttaagtacgtaaattggttggtttgt |
156 |
Q |
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| T |
21221229 |
acaattttcagatatactattaagttaagtacgtaaattggttggtttgt |
21221278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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