View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17357_low_5 (Length: 524)
Name: NF17357_low_5
Description: NF17357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17357_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 30 - 509
Target Start/End: Complemental strand, 2057659 - 2057191
Alignment:
| Q |
30 |
acaataacgactagctaacttacataacagttctgtaaatgattctaacaaaatttcaactaaatctaatagcaagaagttaaaactccccttcaagttg |
129 |
Q |
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||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2057659 |
acaataacgactagctaacttccataacagttctgcaaatgattctaacaaaacttcaaccaaatctaatagcaagaagttaaaactccccttcaagttg |
2057560 |
T |
|
| Q |
130 |
gaagatatacattgaatactcctaacttggacatgaaatcttggaattgaactttatgaaagtgatttgtaagagggtttgacaattgttgactagactt |
229 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2057559 |
gaagatatacattgaatactcctaacttggacattaaatcttggaattgaactttatgaaagtgatttgtaagagggtttgacaattgttgactagactt |
2057460 |
T |
|
| Q |
230 |
acatatgaattatgttttgacttcacattcgtagttggatcgttggcaagttgtatggctgacttgctatcacacagagccatagatgtagacatatcaa |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2057459 |
acatatgaattatgttttgacttcacattcgtagttggatcgttggcaagttgtatggctgacttgctatcacacagagccatagatgtagacatatcaa |
2057360 |
T |
|
| Q |
330 |
tttcaaaagctctaaggagctgtttaatccataacaactcattggttacaactgctaaagcacgatactcagcctcagtcgatgaacgtgactttgttga |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2057359 |
tttcaaaagctctaaggagctgtttaatccataacaactcattggttacaactgctaaagcacgatactcagcct-----------cgtgactttgttga |
2057271 |
T |
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| Q |
430 |
ttgtttccttgacttccaagtaatcaagaattctccaagatagatgcaaaaccaattggttgatcatccacatatgttgt |
509 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2057270 |
ttgtttccttgacttccaagtaatcaagaattctccaagatagatgcaaaatcaattggttgatcatccacatatgttgt |
2057191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 2057735 - 2057706
Alignment:
| Q |
1 |
tttaattaaaagtttaacacttgagtttaa |
30 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
2057735 |
tttaattaaaagtttaacacttgagtttaa |
2057706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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