View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17357_low_6 (Length: 523)
Name: NF17357_low_6
Description: NF17357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17357_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 10 - 402
Target Start/End: Original strand, 7425482 - 7425872
Alignment:
| Q |
10 |
agaagcataggttgatggctatttgttaaacagaatctgatgtaaggtgctgtgaagnnnnnnnnaacaaatttaacgaaagttgtatcatgataatacg |
109 |
Q |
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| T |
7425482 |
agaatcataggttgatggctatttgttaaacagaatctgatgtaaggtgctgtgaagttttttttaacaaatttaacgaaagttgcattatgataatacg |
7425581 |
T |
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| Q |
110 |
ttgacatttcaactatgttggtaccacttttacnnnnnnnnnn--------ctttgtgcggttattaatcctttaaaatctctcttaaggtattattaat |
201 |
Q |
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| T |
7425582 |
ttgacatttcaactatgttggtaccactttgacaaaaaaaaaaaaaaaaaactctgtgcggtcattaatcctttaaaatctcacttaaagtattattaat |
7425681 |
T |
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| Q |
202 |
ataaaatataaaaataaagggtgaggagaggagacataaaccaaactcatcgaaataagagtaacgaaaacgataagaaggtaaatcaaccatgtctctg |
301 |
Q |
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| T |
7425682 |
ataaaatataaaaataaaaggtgaggagaggagacataaaccaaactcatcgaaataagagtaacgaaaacgataagaaggtaaatcaa----------- |
7425770 |
T |
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| Q |
302 |
aagaaacattttcttaaacaactaagtaattgatctaacc-aactaaactattaacaaaaatgttggcatcggttagtctatcttcacaagtatttgtgt |
400 |
Q |
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| T |
7425771 |
aagaaacattttcttaaacaactaagtaattgatctaaccaaactaaactattaacaaaaatgttagcatcggttagtctatcttcacaagtatttgtgt |
7425870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 466 - 506
Target Start/End: Original strand, 7425883 - 7425923
Alignment:
| Q |
466 |
ggtcaaaattgaaaatgtgtgatgttgcatatctttttact |
506 |
Q |
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| T |
7425883 |
ggtcaaaattgaaaatgtgtgatgttgcatatctttttact |
7425923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 29493418 - 29493361
Alignment:
| Q |
234 |
gacataaaccaaactcatcgaaataagagtaacgaaaacgataagaaggtaaatcaac |
291 |
Q |
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| T |
29493418 |
gacataaaccaaactcatcaaaacaagataaacaaaaacgataagaaagtaagtcaac |
29493361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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