View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17357_low_8 (Length: 446)

Name: NF17357_low_8
Description: NF17357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17357_low_8
NF17357_low_8
[»] chr7 (2 HSPs)
chr7 (20-194)||(34300833-34301006)
chr7 (282-357)||(34300670-34300745)
[»] chr1 (1 HSPs)
chr1 (82-168)||(24646903-24646988)
[»] chr2 (2 HSPs)
chr2 (83-153)||(13975602-13975672)
chr2 (83-153)||(13965174-13965243)
[»] chr5 (1 HSPs)
chr5 (81-149)||(19528039-19528106)


Alignment Details
Target: chr7 (Bit Score: 116; Significance: 7e-59; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 34301006 - 34300833
Alignment:
Q  20 caagcaagggctttaggcctcaatttttgggtcaaaaaaggccnnnnnnnnnnnnnnnnnaaatttggttataaatatataacatggcaaaaagagttat 119  Q
    |||||||||||||||||||||||||||||||||||||||||||                 || |||||||||||||||||||||||||||||||||||||    
T  34301006 caagcaagggctttaggcctcaatttttgggtcaaaaaaggcctatttttttttatttttaa-tttggttataaatatataacatggcaaaaagagttat 34300908  T
Q  120 agacatttgcatggtttaattggttattgaaaaggcttcaaatattctttgccacgggttcaagtcttggactcc 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34300907 agacatttgcatggtttaattggttattgaaaaggcttcaaatattctttgccacgggttcaagtcttggactcc 34300833  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 282 - 357
Target Start/End: Complemental strand, 34300745 - 34300670
Alignment:
Q  282 ggcctcttaatacactgggctggccctgcttggtgtttgatttctgataattctcaaccaattttgcaaaccttgg 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34300745 ggcctcttaatacactgggctggccctgcttggtgtttgatttctgataattctcaaccaattttgcaaaccttgg 34300670  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 24646988 - 24646903
Alignment:
Q  82 atttggttataaatatataacatggcaaaaagagttatagacatttgcatggtttaattggttattgaaaaggcttcaaatattctt 168  Q
    |||||||||||||||||||| ||| |||| | | |||||||||||| ||||||||||||||||| |||||| || ||||||| ||||    
T  24646988 atttggttataaatatataatatgacaaataaa-ttatagacatttacatggtttaattggttaatgaaaaagcctcaaatactctt 24646903  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 153
Target Start/End: Original strand, 13975602 - 13975672
Alignment:
Q  83 tttggttataaatatataacatggcaaaaagagttatagacatttgcatggtttaattggttattgaaaag 153  Q
    ||||| ||||||||| ||| | |||||||| | |||||| ||||||||| | |||||||||||||||||||    
T  13975602 tttggatataaatatgtaatacggcaaaaaaaattataggcatttgcatagcttaattggttattgaaaag 13975672  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 153
Target Start/End: Original strand, 13965174 - 13965243
Alignment:
Q  83 tttggttataaatatataacatggcaaaaagagttatagacatttgcatggtttaattggttattgaaaag 153  Q
    ||||| ||||||||||||| |||||||| | | ||||||||||||  ||  ||||||||||||||||||||    
T  13965174 tttgggtataaatatataatatggcaaataaa-ttatagacatttatataatttaattggttattgaaaag 13965243  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 19528039 - 19528106
Alignment:
Q  81 aatttggttataaatatataacatggcaaaaagagttatagacatttgcatggtttaattggttattga 149  Q
    ||||||| ||||||||||||  || ||||| | | |||||||||||| ||| |||||||||||||||||    
T  19528039 aatttggctataaatatatagtatagcaaataaa-ttatagacattttcatagtttaattggttattga 19528106  T

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