View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17358_high_3 (Length: 338)
Name: NF17358_high_3
Description: NF17358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17358_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 83 - 330
Target Start/End: Complemental strand, 3347598 - 3347353
Alignment:
| Q |
83 |
aaaacttattttaactctcatttacttttgtagattattggacctgttgtgcctaaacataaacacttatgatgaattcccgtcttattttaaaatgttg |
182 |
Q |
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| T |
3347598 |
aaaacttattttaactctcacttacttttgtagattattggacctgtcctgcctaaacataaacacttatgatgaattcccgtcttattttaaaatgttg |
3347499 |
T |
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| Q |
183 |
gtagtttgtttaatgaagtgttggtctatg-aaaatacaatgagattgtgatagataaatgggtnnnnnnnntgctcatgcattatcttaacttaatttt |
281 |
Q |
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| T |
3347498 |
gtagtttgtttaatgaagtgttggtctatgaaaaatacaatgagattgtgatagataaatgggt---aaaaatgctcatgcagtattttaacttaatttt |
3347402 |
T |
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| Q |
282 |
acctaacgatttatttannnnnnnnccacgttattttggtcattcatct |
330 |
Q |
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| T |
3347401 |
acctaacgatttattttttttttttccacgttattttgatcattcatct |
3347353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 3347642 - 3347599
Alignment:
| Q |
18 |
aagagtaaggtcattaaaaccaacaaaatatctcatgcagacag |
61 |
Q |
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| T |
3347642 |
aagagtaaggtcattaaaaccaacaaaatatctcatgcagacag |
3347599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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