View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17358_low_2 (Length: 451)
Name: NF17358_low_2
Description: NF17358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17358_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 133 - 315
Target Start/End: Original strand, 6174838 - 6175020
Alignment:
| Q |
133 |
tcagaggaatttacgtcagaaattacaaaaaatttgggctggagctcgggcaacttgatggaaactaacatcaaatatcaatatactcaaaattacttcc |
232 |
Q |
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| T |
6174838 |
tcagaagaatttacgtaagaaattacaaaaaatttgggctggagctcggtcaacttgatggaaactaacatcaaatatcaatatactcaaaattacttcc |
6174937 |
T |
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| Q |
233 |
ttcgtgttatactatatgacacaattaactttgtcacacatgccaatgtgcaattttgattttaaatatatttaataatttat |
315 |
Q |
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| T |
6174938 |
ttcgtgttatactatatgacacaattaactttgtcacacatgccaatgtgcaattttgattttaaatatatttaataatttat |
6175020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 335 - 434
Target Start/End: Original strand, 6175579 - 6175678
Alignment:
| Q |
335 |
gatattattgtggcgcgtggggtgttggtgatagtgagtagcgtgaaatgatatgatacaaaacccgcacacaaatctttcctccataccatgtccatgt |
434 |
Q |
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| T |
6175579 |
gatattattgtggcgcgtggggtgttggtgatagtgagtagcgtgaaatgatatgatacaaaacccgcacacaaatctttcctccataccatgtccatgt |
6175678 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 46474090 - 46474137
Alignment:
| Q |
137 |
aggaatttacgtcagaaattacaaaaaatttgggctggagctcgggca |
184 |
Q |
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| T |
46474090 |
aggaatttacataagaaattgcaaaaaatttgggccggagctcgggca |
46474137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 315
Target Start/End: Original strand, 23591208 - 23591239
Alignment:
| Q |
284 |
aattttgattttaaatatatttaataatttat |
315 |
Q |
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| T |
23591208 |
aattttgattttaaatatatttaataatttat |
23591239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 315
Target Start/End: Original strand, 23591476 - 23591507
Alignment:
| Q |
284 |
aattttgattttaaatatatttaataatttat |
315 |
Q |
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| T |
23591476 |
aattttgattttaaatatatttaataatttat |
23591507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 10907684 - 10907635
Alignment:
| Q |
133 |
tcagaggaatttacgtcagaaattacaaaaaatttgggctggagctcggg |
182 |
Q |
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|||||||||||||| | ||||||| |||||||||||||| ||||| |||| |
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| T |
10907684 |
tcagaggaatttacataagaaattgcaaaaaatttgggccggagcccggg |
10907635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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