View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17359_low_11 (Length: 245)
Name: NF17359_low_11
Description: NF17359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17359_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 1903073 - 1903298
Alignment:
| Q |
1 |
tagggtagggttagtattatgcaaaatgagagatattatacattaaaaattaaagtccataaagtatatgaatattgacacagtcacgaacaccagatat |
100 |
Q |
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| T |
1903073 |
tagggtagggttagtattatgcaaaatgagagatattatacattaaaaattaaagtccataaagtatatgaatattgacacagtcacgaacaccatatat |
1903172 |
T |
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| Q |
101 |
aacactgacactaggacatagacgccaatattaatttgatgaaatggaaaagattggatgtaacacgcatgtctatgtctgacaccagcacgtgccaaac |
200 |
Q |
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| T |
1903173 |
aacactgacactaggacatagacatcaataataatttgatgaaatggaaaagattggatgtaacatgcatgtctatgtctgacaccagcacgtgccaaac |
1903272 |
T |
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| Q |
201 |
actaatgcctgttgaacactgaacac |
226 |
Q |
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| T |
1903273 |
actaatgcctgttgaacactgaacac |
1903298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 1907306 - 1907531
Alignment:
| Q |
1 |
tagggtagggttagtattatgcaaaatgagagatattatacattaaaaattaaagtccataaagtatatgaatattgacacagtcacgaacaccagatat |
100 |
Q |
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| T |
1907306 |
tagggtagggttagtattatgcaaaatgagagatattatacattaaaaattaaagtccataaagtatatgaatattgacacagtcacgaacaccatatat |
1907405 |
T |
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| Q |
101 |
aacactgacactaggacatagacgccaatattaatttgatgaaatggaaaagattggatgtaacacgcatgtctatgtctgacaccagcacgtgccaaac |
200 |
Q |
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| T |
1907406 |
aacactgacactaggacatagacatcaataataatttgatgaaatggaaaagattggatgtaacatgcatgtctatgtctgacaccagcacgtgccaaac |
1907505 |
T |
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| Q |
201 |
actaatgcctgttgaacactgaacac |
226 |
Q |
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| T |
1907506 |
actaatgcctgttgaacactgaacac |
1907531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 1897876 - 1897960
Alignment:
| Q |
142 |
aaatggaaaagattggatgtaacacgcatgtctatgtctgacaccagcacgtgccaaacactaatgcctgttgaacactgaacac |
226 |
Q |
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| T |
1897876 |
aaatggaaatgattgaatttaacatgcatgtctatgtccgacaccagcacgtgccagacatcgatacatgttggacactgaacac |
1897960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 1897627 - 1897676
Alignment:
| Q |
74 |
attgacacagtcacgaacaccagatataacactgacactaggacatagac |
123 |
Q |
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| T |
1897627 |
attgacacagtcacgaacaccagacataatactgacactagcacgtagac |
1897676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 1892137 - 1892189
Alignment:
| Q |
4 |
ggtagggttagtattatgcaaaatgagagatattatacattaaaaattaaagt |
56 |
Q |
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|||||| ||||||||||||||||||||||| |||||| |||| |||| |||| |
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| T |
1892137 |
ggtaggattagtattatgcaaaatgagagacgttatactttaagaattgaagt |
1892189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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