View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17359_low_12 (Length: 245)
Name: NF17359_low_12
Description: NF17359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17359_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 23 - 231
Target Start/End: Complemental strand, 34516856 - 34516629
Alignment:
| Q |
23 |
tttcttccaaaattatatcttaaattataaaagggagtcacataatgcatgccaatacacacatgtgctaacactcactttaatagcctgtatttgttga |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34516856 |
tttcttccaaaattatatcttaaattataaaagggagtcacataatgcatgccaatacacacatgtgctaacactcactttaatagcctgtatttgttga |
34516757 |
T |
|
| Q |
123 |
cttgagatacaattctgattgtttctctaaatctcatgatctaag-------------------cctatgattgtaattactatattagtatactgacag |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
34516756 |
cttgagatacaattctgattgtttctctaaatctcatgatctaaggctagggttgcactaacctactataattgtaattactatattagtatactgacag |
34516657 |
T |
|
| Q |
204 |
tctaaaggatcatgtagcaagaggttta |
231 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
34516656 |
tctaaaggatcatgtagcaagaggttta |
34516629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 34526031 - 34525881
Alignment:
| Q |
17 |
aaaaaatttcttccaaaattatatcttaaattataaaagggagtcacataatgcatgccaatacacacatgtgctaacactcactttaatagcctgtatt |
116 |
Q |
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|||||| ||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
34526031 |
aaaaaaattcttgcaaaattatatcttaatttgattaagggagtcacataatgcatgccaatacacacatgtactgttactcactttaatagcctgtatt |
34525932 |
T |
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| Q |
117 |
tgttgacttgagatacaattctgattgtttctctaaatctcatgatctaag |
167 |
Q |
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| T |
34525931 |
tgttgacttgagatacaattatgatggtttctctaaatatcatgatctaag |
34525881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 34505273 - 34505121
Alignment:
| Q |
17 |
aaaaaatttcttccaaaattatatcttaaattataa-aagggagtcacataatgcatgccaa-tacacacatgtgctaacactcactttaatagcctgta |
114 |
Q |
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|||||| ||||| ||||||||||||||||||| | |||||||||||||| |||||||||| ||||||||||| || | |||||||||||||||||||| |
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| T |
34505273 |
aaaaaaattcttgcaaaattatatcttaaatttgattaagggagtcacatattgcatgccaaatacacacatgtactgatactcactttaatagcctgta |
34505174 |
T |
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| Q |
115 |
tttgttgacttgagatacaattctgattgtttctctaaatctcatgatctaag |
167 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
34505173 |
tttgttgacttgagatacaattctgttggtttctctaaatctcatgatctaag |
34505121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 27616421 - 27616270
Alignment:
| Q |
17 |
aaaaaatttcttccaaaattatatcttaaattataa-aagggagtcacataatgcatgccaatacacacatgtgctaacactcactttaatagcctgtat |
115 |
Q |
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|||||| ||||| ||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||| || | || ||||| |||||||||||| |
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| T |
27616421 |
aaaaaaattcttgcaaaattatatcttaaatttgattaagggagtcacatattgcatgccaatacacacatgtactgatacccacttcaatagcctgtat |
27616322 |
T |
|
| Q |
116 |
ttgttgacttgagatacaattctgattgtttctctaaatctcatgatctaag |
167 |
Q |
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||||||||||||||||||| |||| | ||||||||||||||||||||||||| |
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| T |
27616321 |
ttgttgacttgagatacaaatctgttggtttctctaaatctcatgatctaag |
27616270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 34477356 - 34477214
Alignment:
| Q |
24 |
ttcttccaaaattatatcttaaatt-ataaaagggagtcacataatgcatgccaatacacacatgtgctaacactcactttaatagcctgtatttgttga |
122 |
Q |
| |
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||||||| |||||||||||||| || || ||||| |||| ||||||| ||||| ||||| | |||| ||| ||||||||| |||||| ||||||| |||| |
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| T |
34477356 |
ttcttccgaaattatatcttaatttgattaaagg-agtctcataatgtatgccgatacataaatgtacta-cactcacttaaatagcttgtatttattga |
34477259 |
T |
|
| Q |
123 |
cttgagatacaattctgattgtttctctaaatctcatgatctaag |
167 |
Q |
| |
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|||||||| |||||| ||| |||||||||||| |||||||||||| |
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| T |
34477258 |
cttgagatgcaattcagatggtttctctaaatatcatgatctaag |
34477214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 167
Target Start/End: Complemental strand, 27615816 - 27615700
Alignment:
| Q |
53 |
aagggagtcacataatgcatgccaatacacacatgtgctaacactcactttaatagcctgtatttgttga--cttgagatacaattctgattgtttctct |
150 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||||| ||| | || || |||||| ||| |||||||||| ||| |||| ||| |
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| T |
27615816 |
aagggagtcacataatgcatgccaatgcacacatgtactaacactcacttaaatggtatgaatgtgttgaattttgtgatacaattcagatggtttatct |
27615717 |
T |
|
| Q |
151 |
aaatctcatgatctaag |
167 |
Q |
| |
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|||||||||||| |||| |
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| T |
27615716 |
aaatctcatgatttaag |
27615700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 156
Target Start/End: Complemental strand, 34462504 - 34462372
Alignment:
| Q |
24 |
ttcttccaaaattatatcttaaatt--ataaaagggagtcacataatgcatgccaatacacacatgtgctaacactcactttaatagcctgtatttgttg |
121 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||| || | ||||||| ||||| ||||| | |||| ||| ||| ||||| |||||| ||||||| ||| |
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| T |
34462504 |
ttcttccgaaattatatcttaaatttgattaaagg-agcctcataatgtatgccgatacataaatgtacta-cacccacttaaatagcttgtatttattg |
34462407 |
T |
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| Q |
122 |
acttgagatacaattctgattgtttctctaaatct |
156 |
Q |
| |
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||||||||| |||||| ||| |||||||||||||| |
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| T |
34462406 |
acttgagatgcaattcagatggtttctctaaatct |
34462372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 161
Target Start/End: Complemental strand, 34504903 - 34504793
Alignment:
| Q |
53 |
aagggagtcacataatgcatgccaatacacacatgtgctaacactcactttaatagcctgtatttgttga--cttgagatacaattctgattgtttctct |
150 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| | |||||||| || ||| | || || |||||| ||| |||||||||| ||| |||| ||| |
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| T |
34504903 |
aagggagtcacataatgcatgccaatgcacacatgtaccaacactcatttaaatggtatgaatgtgttgaattttgtgatacaattcagatggtttatct |
34504804 |
T |
|
| Q |
151 |
aaatctcatga |
161 |
Q |
| |
|
||||||||||| |
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|
| T |
34504803 |
aaatctcatga |
34504793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 34486553 - 34486477
Alignment:
| Q |
27 |
ttccaaaattatatcttaaattataa-aagggagtcacataatgcatgccaatacacacatgtgctaacactcactt |
102 |
Q |
| |
|
||||||||||||||||||| || | |||||||| ||||||||||||||||| ||||||||| |||||||| |||| |
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|
| T |
34486553 |
ttccaaaattatatcttaactttgattaagggagttacataatgcatgccaatgcacacatgtactaacacttactt |
34486477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 27625517 - 27625454
Alignment:
| Q |
93 |
acactcactttaatagcctgtatttgttgacttgagatacaattctgattgtttctctaaatct |
156 |
Q |
| |
|
|||| ||||| |||||| ||||||| |||||||||||||||| || ||| |||||||||||||| |
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|
| T |
27625517 |
acacccacttaaatagcttgtatttattgacttgagatacaactcagatggtttctctaaatct |
27625454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 34511290 - 34511227
Alignment:
| Q |
93 |
acactcactttaatagcctgtatttgttgacttgagatacaattctgattgtttctctaaatct |
156 |
Q |
| |
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|||| ||||| |||||| ||||||| |||||||||||||||| || ||| |||||||||||||| |
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|
| T |
34511290 |
acacccacttaaatagcttgtatttattgacttgagatacaactcagatggtttctctaaatct |
34511227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 27616249 - 27616187
Alignment:
| Q |
169 |
ctatgattgtaattactatattagtatactgacagtctaaaggatcatgtagcaagaggttta |
231 |
Q |
| |
|
|||||||| ||||||| |||||| |||| ||||||| ||||||| ||||||||||||| |||| |
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|
| T |
27616249 |
ctatgattctaattacgatattactatattgacagtataaaggaacatgtagcaagagattta |
27616187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 34505100 - 34505038
Alignment:
| Q |
169 |
ctatgattgtaattactatattagtatactgacagtctaaaggatcatgtagcaagaggttta |
231 |
Q |
| |
|
|||||||| ||||||| |||||| |||| ||||||| ||||||| ||||||||||||| |||| |
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|
| T |
34505100 |
ctatgattctaattacgatattactatattgacagtataaaggaacatgtagcaagagattta |
34505038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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