View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17359_low_14 (Length: 225)
Name: NF17359_low_14
Description: NF17359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17359_low_14 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 27918338 - 27918126
Alignment:
| Q |
13 |
acctgtggttgtggcatgatcttcactccagtagctcaatgcatgctttcttggtacaaagaccgataaactcttttgtaccttctcaacaaatgaccta |
112 |
Q |
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| T |
27918338 |
acctgtggttgtggcatgatcttcactccagtagctcaatgcatgctttcttggtacaaagactgataaactcttttgtaccttctcaacaaatgaacta |
27918239 |
T |
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| Q |
113 |
agcatcttgaatattggggaacaatgtagtatttgaattattaatcaagatcggaatatgattttattagcagagtttggctatttatgctgagcgagaa |
212 |
Q |
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| T |
27918238 |
agcatcttgaatattggggaacaatgtagtatttgaattattaatcaagattggaatatgattttattagcagagtttggctatttatgctgagcgagaa |
27918139 |
T |
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| Q |
213 |
cacgatatttatt |
225 |
Q |
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||||||||||||| |
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| T |
27918138 |
cacgatatttatt |
27918126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 27896228 - 27896116
Alignment:
| Q |
16 |
tgtggttgtggcatgatcttcactccagtagctcaatgcatgctttcttggtacaaagaccgataaactcttttgtaccttctcaacaaatgacctaagc |
115 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||| |
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| T |
27896228 |
tgtggttgtggcatgatcttcatttatgtagctcaatgcatgctttcttggtacaaagactgataaactcttttgtaccttcccaacaaatgaatcaagc |
27896129 |
T |
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| Q |
116 |
atcttgaatattg |
128 |
Q |
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| T |
27896128 |
attttgaatattg |
27896116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 27929894 - 27929786
Alignment:
| Q |
20 |
gttgtggcatgatcttcactccagtagctcaatgcatgctttcttggtacaaagaccgataaactcttttgtaccttctcaacaaatgacctaagcatct |
119 |
Q |
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| T |
27929894 |
gttgtggcatgatcttcattccagtagctcaatgcatgctttctgggtacaaagactgataaactcttttgtgctttaccaacaaaagaactaagcatct |
27929795 |
T |
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| Q |
120 |
tgaatattg |
128 |
Q |
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| T |
27929794 |
tgaatattg |
27929786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 22 - 125
Target Start/End: Complemental strand, 27923517 - 27923414
Alignment:
| Q |
22 |
tgtggcatgatcttcactccagtagctcaatgcatgctttcttggtacaaagaccgataaactcttttgtaccttctcaacaaatgacctaagcatcttg |
121 |
Q |
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| T |
27923517 |
tgtggcatgatcttcactccagtagctcaatgcatgctttctcggtacaaagagtgataaactcttttgtactttaccaacaaaagaactaagcatcttg |
27923418 |
T |
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| Q |
122 |
aata |
125 |
Q |
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|||| |
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| T |
27923417 |
aata |
27923414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 27896090 - 27896000
Alignment:
| Q |
131 |
gaacaatgtagtatttgaattattaatcaagatcggaatatgattttattagcagagtttggctatttatgctgagcgagaacacgatattt |
222 |
Q |
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|||||| ||||||| | |||||||||| |||| || |||| ||||||| |||| ||||||||||||||||||| |||| ||||||||||| |
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| T |
27896090 |
gaacaaggtagtatctaaattattaattgagattgggatataattttatgtgcag-gtttggctatttatgctgaacgaggacacgatattt |
27896000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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