View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17359_low_2 (Length: 631)
Name: NF17359_low_2
Description: NF17359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17359_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 20 - 414
Target Start/End: Original strand, 7077431 - 7077825
Alignment:
| Q |
20 |
tgagggtggttttgtcactcacatagcaccaaattatttcttcgtttggagatttcctataggcaaaactgaacattgtcgtgcagaatggaaaggttta |
119 |
Q |
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| T |
7077431 |
tgagggtggttttgtcactcacatagcaccaaattatttcttcgtttggagatttcctataggcaaaactgaacattgtcgtgcagaatggaaaggttta |
7077530 |
T |
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| Q |
120 |
catgcttcattcattgcatatgatccccaatatgatggtaaaggtgctgatctcttttggatagcaaagaaagaagggttatttcatagttttgatgata |
219 |
Q |
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| T |
7077531 |
catgcttcattcattgcatatgatccccaatatgatggtaaaggtgctgatctcttttggatagcaaagaaagaagggttatttcatagttttgatgata |
7077630 |
T |
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| Q |
220 |
ggtcctatgacaaaaatgttagttgggttaagagttaatattccttctaatatttctttaataaatactcatctcattgttgtacaatataacatgaaga |
319 |
Q |
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| T |
7077631 |
ggtcctatgacaaaaatgttagttgggttaagagttgatattccttctaatatttctttaataaatactcctctcattgttgtacaatataacatgaaga |
7077730 |
T |
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| Q |
320 |
ttatgtgtacaatagttggtgaaatatcgggtttgtgtactgttctgtcattttgaacttgactatggttatgatgatttggtgtaaaacaaaac |
414 |
Q |
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| T |
7077731 |
ttatgtgtacaatagttggtgaaatatcgggtttgtgtactgttctgtcattttgaacttgactatggttatgatgatttggtgtaaaacaaaac |
7077825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 462 - 620
Target Start/End: Complemental strand, 8814658 - 8814500
Alignment:
| Q |
462 |
ttgtgcaggttcaaagttagatgctagtccaaggcttgattctaatactttcactttgtgttggtgttgtatcttcttagctttcagtggtgttctgttt |
561 |
Q |
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| T |
8814658 |
ttgtgcaggttcaaagttagatgctagtccaaggcttgattctaagactttcactttgtgttggtgttgtatcttcttagcttctagtggtgttctggtt |
8814559 |
T |
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| Q |
562 |
tgttgttctttatttcaattttctgtttaggatgtggtactgtgctgggtctgtgctgc |
620 |
Q |
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| T |
8814558 |
tgttgttctttaattcaattttctgtttaggatgtggtactgtgctgggtctttgctgc |
8814500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 9e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 448 - 604
Target Start/End: Original strand, 21964446 - 21964598
Alignment:
| Q |
448 |
gaatccaaccttgattgtgcaggttcaaagttagatgctagtccaaggcttgattctaatactttcactttgtgttggtgttgtatcttcttagctttca |
547 |
Q |
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| T |
21964446 |
gaatccaagcttgattgtgcaggttcagagttagatgctagtccatggcttgattctaagactttcactttgtgttggtgttgtatctccttagcttcca |
21964545 |
T |
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| Q |
548 |
gtggtgttctgttttgttgttcttta-tttcaattttctgtttaggatgtggtactgt |
604 |
Q |
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| T |
21964546 |
atcg-----tgttttgttgttctttattttgagttttctgtttagcatgtggtactgt |
21964598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 585
Target Start/End: Original strand, 23379793 - 23379904
Alignment:
| Q |
478 |
ttagatgctagtccaaggcttgattctaatactttcactttgtgtt-ggtgttgtatcttcttagctttc----agtggtgttctgttttgttgttcttt |
572 |
Q |
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||||||||||||||| |||||||| |||| | | || ||||||||| |||||||| ||| |||||||| | | ||||||| |||||||||||||||| |
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| T |
23379793 |
ttagatgctagtccatggcttgatgctaagaatgtc-ctttgtgtttggtgttgtctctccttagcttccttccaatggtgttttgttttgttgttcttt |
23379891 |
T |
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| Q |
573 |
atttcaattttct |
585 |
Q |
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| T |
23379892 |
atttagattttct |
23379904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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