View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17359_low_3 (Length: 611)
Name: NF17359_low_3
Description: NF17359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17359_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 460; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 31 - 596
Target Start/End: Original strand, 2343978 - 2344561
Alignment:
| Q |
31 |
tggcttacgtcttagccgaataccggattaccagggcccttttcccctggaaatcagagggtaaagacnnnnnnnggcctagtttccttctattattacg |
130 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2343978 |
tggcttacgtcttagccaattaccggattaccagggcccttttcccctggaaatcaaagggtaaagacaaaaaaaggcctagtttccttctattattacg |
2344077 |
T |
|
| Q |
131 |
gacgctgtccataatggcacaagttctgtagcctttagtttcttgaatgcaggataattgttgctgacagcaacttgctgttgtgctcaatgccctaatg |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2344078 |
gacgctgtccataatggcacaagttctgtagcctttagtttcttgaatgcaggataattgttgctgacagcaacttgctgttgtgctcaatgccctaatg |
2344177 |
T |
|
| Q |
231 |
ttaatattgtaacatgc------------------aatttaatagtttttaactatttgtctcgttgtctgcaggtgggattttaagttgaacaattttg |
312 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2344178 |
ttaatattgtaacatgcggaagtagattaaaatgcaatttaatagtttttaactatttgtctcgttgtctgcaggggggattttaagttgaacaattttg |
2344277 |
T |
|
| Q |
313 |
aagatggtgttttatcatctgattttatggttggacttctcatggcttctccaatatttgtgtctctagctaagaggtaattaggatagccattcgtgtt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2344278 |
aagatggtgttttatcatctgattttatggttggacttctcatggcttctccaatatttgcgtctctagctaagaggtaattaggatagccattcgtgtt |
2344377 |
T |
|
| Q |
413 |
gcaatcagtttgaaacctattcatattattagatacttttgttactttaaacattaaatgtcataagaatcctttctcacaattcatgtattttgcagtg |
512 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2344378 |
gcaatcagtttgaaacctattcatactattagatacttttgttagcttaaacattaaatgtcataagaatcctttctcacaattcatgtatttcgcagtg |
2344477 |
T |
|
| Q |
513 |
tcaatccatttagacttataggatctggattgtcaatttggacactagcaaccttcttctgtggtttttcttttaatttctggt |
596 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2344478 |
tcaatccatttaaacttataggatccggattgtcaatttggacactagcaaccttcttctgtggtttttcttttaatttctggt |
2344561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 282 - 447
Target Start/End: Original strand, 2336997 - 2337162
Alignment:
| Q |
282 |
tgcaggtgggattttaagttgaacaattttgaagatggtgttttatcatctgattttatggttggacttctcatggcttctccaatatttgtgtctctag |
381 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
2336997 |
tgcaggggggattttaaattgaacaattttgaagatggagttttgtcatctgcttttatggttggacttctcgtggcttctccaatatttgcctctctag |
2337096 |
T |
|
| Q |
382 |
ctaagaggtaattaggatagccattcgtgttgcaatcagtttgaaacctattcatattattagata |
447 |
Q |
| |
|
|| |||||||||||| ||| |||||| |||| |||||| | |||||||||||| |||||||||||| |
|
|
| T |
2337097 |
ctcagaggtaattagaataaccattcatgttccaatcaatatgaaacctattcttattattagata |
2337162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 464 - 596
Target Start/End: Original strand, 2337536 - 2337668
Alignment:
| Q |
464 |
cattaaatgtcataagaatcctttctcacaattcatgtattttgcagtgtcaatccatttagacttataggatctggattgtcaatttggacactagcaa |
563 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||| ||||||||| | ||||| || || | |
|
|
| T |
2337536 |
cattaactgacataagaatcctttctcacaattcatatattttgcagtgtaaatccatttagacttgtaggagttggattgtcggtgtggactcttgcga |
2337635 |
T |
|
| Q |
564 |
ccttcttctgtggtttttcttttaatttctggt |
596 |
Q |
| |
|
||||||| || ||||||||||| |||||||||| |
|
|
| T |
2337636 |
ccttcttttgcggtttttctttcaatttctggt |
2337668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 314 - 447
Target Start/End: Original strand, 2323964 - 2324097
Alignment:
| Q |
314 |
agatggtgttttatcatctgattttatggttggacttctcatggcttctccaatatttgtgtctctagctaagaggtaattaggatagccattcgtgttg |
413 |
Q |
| |
|
|||||| ||||||||||||| |||||||| ||||||||| |||||||||||||||||| | ||||||| ||||||||||| || |||||| |||| |
|
|
| T |
2323964 |
agatggagttttatcatctgcttttatgggtggacttcttgtggcttctccaatatttgcatttctagctcagaggtaattaatgtaaccattcatgttc |
2324063 |
T |
|
| Q |
414 |
caatcagtttgaaacctattcatattattagata |
447 |
Q |
| |
|
|||||| |||||||||||| || |||| |||| |
|
|
| T |
2324064 |
caatcaaagtgaaacctattcttagtattcgata |
2324097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 289 - 372
Target Start/End: Complemental strand, 36799414 - 36799331
Alignment:
| Q |
289 |
gggattttaagttgaacaattttgaagatggtgttttatcatctgattttatggttggacttctcatggcttctccaatatttg |
372 |
Q |
| |
|
|||||||||| |||| ||||||| ||||||| ||| | ||||||| |||||||||||||||||| || |||||||||||||||| |
|
|
| T |
36799414 |
gggattttaacttgaccaattttcaagatggagttctttcatctgcttttatggttggacttcttatagcttctccaatatttg |
36799331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 501 - 596
Target Start/End: Complemental strand, 36798802 - 36798707
Alignment:
| Q |
501 |
tattttgcagtgtcaatccatttagacttataggatctggattgtcaatttggacactagcaaccttcttctgtggtttttcttttaatttctggt |
596 |
Q |
| |
|
||||||||||||| || || ||||||||||| ||| |||||||||| ||||||| | |||||||| | ||||||| ||||||| |||||||||| |
|
|
| T |
36798802 |
tattttgcagtgtaaacccctttagacttattggagttggattgtcagtttggactgttgcaaccttatgctgtggtctttctttcaatttctggt |
36798707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 284 - 372
Target Start/End: Complemental strand, 12969710 - 12969622
Alignment:
| Q |
284 |
caggtgggattttaagttgaacaattttgaagatggtgttttatcatctgattttatggttggacttctcatggcttctccaatatttg |
372 |
Q |
| |
|
|||| |||||||||| |||| |||||| ||||||||||||| ||||||| ||||||||||||||| | || ||||||||||| |||| |
|
|
| T |
12969710 |
caggggggattttaacttgagtaattttcaagatggtgttttgtcatctgcatttatggttggacttttaattgcttctccaatttttg |
12969622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University