View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17359_low_4 (Length: 598)

Name: NF17359_low_4
Description: NF17359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17359_low_4
NF17359_low_4
[»] chr2 (11 HSPs)
chr2 (82-583)||(40947987-40948488)
chr2 (22-85)||(37259667-37259730)
chr2 (22-81)||(16431896-16431955)
chr2 (22-83)||(14805572-14805633)
chr2 (22-83)||(17692639-17692700)
chr2 (22-67)||(15332778-15332823)
chr2 (22-82)||(37080750-37080810)
chr2 (13-83)||(33751504-33751574)
chr2 (13-82)||(7091125-7091194)
chr2 (337-377)||(40634605-40634645)
chr2 (45-87)||(7553344-7553386)
[»] chr7 (5 HSPs)
chr7 (22-81)||(29245297-29245356)
chr7 (22-82)||(45974468-45974528)
chr7 (26-82)||(6444190-6444246)
chr7 (26-83)||(34095880-34095937)
chr7 (22-86)||(47329689-47329753)
[»] scaffold0166 (1 HSPs)
scaffold0166 (22-87)||(25086-25151)
[»] chr5 (6 HSPs)
chr5 (22-87)||(24782703-24782768)
chr5 (22-83)||(40321518-40321579)
chr5 (22-81)||(41405992-41406051)
chr5 (22-84)||(31480457-31480519)
chr5 (34-87)||(39885872-39885925)
chr5 (22-81)||(1836038-1836097)
[»] chr8 (5 HSPs)
chr8 (22-81)||(533729-533788)
chr8 (34-81)||(13800640-13800687)
chr8 (32-78)||(30089221-30089267)
chr8 (44-78)||(30936663-30936697)
chr8 (13-81)||(3877569-3877637)
[»] chr1 (7 HSPs)
chr1 (22-92)||(45346253-45346323)
chr1 (26-81)||(12983569-12983624)
chr1 (26-81)||(45319607-45319662)
chr1 (27-91)||(52382608-52382672)
chr1 (22-81)||(47036289-47036348)
chr1 (22-75)||(22105398-22105451)
chr1 (22-78)||(49410546-49410602)
[»] chr3 (7 HSPs)
chr3 (22-82)||(39831200-39831260)
chr3 (22-81)||(20108090-20108149)
chr3 (22-81)||(29835803-29835862)
chr3 (22-81)||(12945498-12945557)
chr3 (34-81)||(29702389-29702436)
chr3 (45-81)||(5234773-5234809)
chr3 (13-81)||(33213415-33213483)
[»] chr4 (8 HSPs)
chr4 (22-81)||(20135456-20135515)
chr4 (26-82)||(55917400-55917456)
chr4 (22-81)||(24226870-24226929)
chr4 (34-82)||(15530059-15530107)
chr4 (26-81)||(42063003-42063058)
chr4 (26-81)||(45988116-45988171)
chr4 (26-80)||(47028101-47028155)
chr4 (22-78)||(28683100-28683155)
[»] scaffold0896 (1 HSPs)
scaffold0896 (26-81)||(1975-2030)
[»] chr6 (1 HSPs)
chr6 (26-81)||(7124334-7124389)
[»] scaffold0685 (1 HSPs)
scaffold0685 (27-91)||(6621-6685)
[»] scaffold0662 (1 HSPs)
scaffold0662 (26-80)||(6980-7034)


Alignment Details
Target: chr2 (Bit Score: 439; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 82 - 583
Target Start/End: Original strand, 40947987 - 40948488
Alignment:
Q  82 ataaataaaacctagaggccaaaactaatactaatagaagaaattaagatcaagaaagattgttcatcgaggtactattttccctgtagtgctgcctatt 181  Q
    |||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40947987 ataaataaaacctagaggccaaaactaatactaatagaagaaa----gatcaagaaagattgttcatcgaggtactattttccctgtagtgctgcctatt 40948082  T
Q  182 tgcttggatgtgtatccagatgaagaaagatcaagaactgatga--------tagaagagtctatgcaatttgtaaacacaactacctagggattgttgc 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40948083 tgcttggatgtgtatccagatgaagaaagatcaagaactgatgaagagatgatagaagagtctatgcaatttgtaaacacaactacctagggattgttgc 40948182  T
Q  274 atatgcatgcagaggtttcatgatgatgaattggaagacggtgatggtgatgatagtgatgacacgtgaaggtttcaacaatggcatgcggtcatatatt 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |    
T  40948183 atatgcatgcagaggtttcatgatgatgaattggaagacggtgatggtgatgatagtgatgacacgtgaaggtttcaacaatggcatgcggtcat----t 40948278  T
Q  374 tcaccacgattgtattgtaaaatggctaaaaacaatttatgctatgcctacttgaatatttattgagattattttcagtttttggttcaatattgtgtat 473  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40948279 tcaccacgattgtattgtaaaatggctacaaacaatttatgctatgcctacttgaatatttattgagattattttcagtttttggttcaatattgtgtat 40948378  T
Q  474 caatgtttaatactacttaactagtctacgattgtatgtagtttttgaagttcttttagcttaatgttgattttagagtcattttgataaatcattatta 573  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40948379 caatgtttagtactacttaactagtctacgattgtatgtagtttttgaagttcttttagcttaatgttgattttagagtcattttgataaatcattatta 40948478  T
Q  574 tgtatgtatt 583  Q
    ||||||||||    
T  40948479 tgtatgtatt 40948488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 37259730 - 37259667
Alignment:
Q  22 ttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttcccataa 85  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37259730 ttggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatttcccataa 37259667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 16431896 - 16431955
Alignment:
Q  22 ttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 81  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16431896 ttggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatttccc 16431955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 14805633 - 14805572
Alignment:
Q  22 ttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttcccat 83  Q
    ||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  14805633 ttggatgtaggataacttctctgaaaaattcaatttaatgacttcaccatagaatttcccat 14805572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 17692639 - 17692700
Alignment:
Q  22 ttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttcccat 83  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  17692639 ttggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaattttccat 17692700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 15332778 - 15332823
Alignment:
Q  22 ttggatgtaagataacttctctgaaaaagtcaatttaataacttca 67  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||    
T  15332778 ttggatgtaggataacttctctgaaaaagtcaatttaatgacttca 15332823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 37080750 - 37080810
Alignment:
Q  22 ttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccca 82  Q
    ||||||||| |||||||||    |||||||||||| |||||||||||||||||||||||||    
T  37080750 ttggatgtaggataacttcatcaaaaaagtcaattgaataacttcaccatagaatttccca 37080810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 33751574 - 33751504
Alignment:
Q  13 acattatacttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttcccat 83  Q
    |||||||  ||||||||| | ||||||| | ||||||||||||| ||  ||||||||||||||||||||||    
T  33751574 acattattattggatgtagggtaacttcaccgaaaaagtcaattgaacgacttcaccatagaatttcccat 33751504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 7091125 - 7091194
Alignment:
Q  13 acattatacttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccca 82  Q
    |||||||  ||||||||| | ||||||| | ||||||||||||| ||  |||||||||||||||||||||    
T  7091125 acattattattggatgtagggtaacttcaccgaaaaagtcaattgaacgacttcaccatagaatttccca 7091194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 377
Target Start/End: Original strand, 40634605 - 40634645
Alignment:
Q  337 acgtgaaggtttcaacaatggcatgcggtcatatatttcac 377  Q
    |||||||||| ||||||||| ||||||||||||||||||||    
T  40634605 acgtgaaggtgtcaacaatgccatgcggtcatatatttcac 40634645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 7553386 - 7553344
Alignment:
Q  45 aaaaagtcaatttaataacttcaccatagaatttcccataaat 87  Q
    ||||||||| ||||| |||||||||||||||||||||| ||||    
T  7553386 aaaaagtcattttaacaacttcaccatagaatttcccaaaaat 7553344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 6e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 29245297 - 29245356
Alignment:
Q  22 ttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 81  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29245297 ttggatgtaggataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 29245356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 45974468 - 45974528
Alignment:
Q  22 ttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccca 82  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  45974468 ttggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatttccca 45974528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 6444190 - 6444246
Alignment:
Q  26 atgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccca 82  Q
    ||||| ||||||||| | ||||||||||||| ||| |||||||||||||||||||||    
T  6444190 atgtaggataacttcaccgaaaaagtcaattgaatgacttcaccatagaatttccca 6444246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 34095880 - 34095937
Alignment:
Q  26 atgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttcccat 83  Q
    ||||| ||||||||| |  |||||||||||| ||| ||||||||||||||||||||||    
T  34095880 atgtaggataacttcaccaaaaaagtcaattgaatgacttcaccatagaatttcccat 34095937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 47329689 - 47329753
Alignment:
Q  22 ttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttcccataaa 86  Q
    ||||||||| |||||||||    |||||||||||| ||||||||||||||| |||||||| ||||    
T  47329689 ttggatgtaggataacttcatcaaaaaagtcaattgaataacttcaccataaaatttcccttaaa 47329753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 25151 - 25086
Alignment:
Q  22 ttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttcccataaat 87  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  25151 ttggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatttcccaaaaat 25086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 24782768 - 24782703
Alignment:
Q  22 ttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttcccataaat 87  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  24782768 ttggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatttcccaaaaat 24782703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 40321518 - 40321579
Alignment:
Q  22 ttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttcccat 83  Q
    ||||||||| |||||||||   ||||||||||||| || |||||||||||||||||||||||    
T  40321518 ttggatgtaggataacttcatcgaaaaagtcaattgaacaacttcaccatagaatttcccat 40321579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 41406051 - 41405992
Alignment:
Q  22 ttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 81  Q
    ||||||||| |||||||||   ||||||||||||| || |||||||||||||||||||||    
T  41406051 ttggatgtaggataacttcatcgaaaaagtcaattgaacaacttcaccatagaatttccc 41405992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 31480519 - 31480457
Alignment:
Q  22 ttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttcccata 84  Q
    ||||||||| | ||||||| | ||||||||||||| ||| ||||| |||||||||||||||||    
T  31480519 ttggatgtagggtaacttcaccgaaaaagtcaattgaatgacttctccatagaatttcccata 31480457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 39885872 - 39885925
Alignment:
Q  34 taacttctctgaaaaagtcaatttaataacttcaccatagaatttcccataaat 87  Q
    ||||||| | ||||||||||||| || ||||||||||||||||||||| |||||    
T  39885872 taacttcaccgaaaaagtcaattgaacaacttcaccatagaatttcccttaaat 39885925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 1836038 - 1836097
Alignment:
Q  22 ttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 81  Q
    ||||||||| |||||||||   |||||| |||||| || |||||||||||||||||||||    
T  1836038 ttggatgtaggataacttcatcgaaaaaatcaattgaacaacttcaccatagaatttccc 1836097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 533729 - 533788
Alignment:
Q  22 ttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 81  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  533729 ttggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatttccc 533788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 13800687 - 13800640
Alignment:
Q  34 taacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 81  Q
    ||||||| ||||||||||||||| ||| ||||||||||||||||||||    
T  13800687 taacttcactgaaaaagtcaattgaatgacttcaccatagaatttccc 13800640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 30089221 - 30089267
Alignment:
Q  32 gataacttctctgaaaaagtcaatttaataacttcaccatagaattt 78  Q
    ||||||||| ||||||||||||||| ||  |||||||||||||||||    
T  30089221 gataacttcactgaaaaagtcaattgaaagacttcaccatagaattt 30089267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 78
Target Start/End: Complemental strand, 30936697 - 30936663
Alignment:
Q  44 gaaaaagtcaatttaataacttcaccatagaattt 78  Q
    ||||||||||||| |||||||||||||||||||||    
T  30936697 gaaaaagtcaattaaataacttcaccatagaattt 30936663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 3877637 - 3877569
Alignment:
Q  13 acattatacttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 81  Q
    |||||||  ||||||||| | ||||||| | |||||| |||||| ||  ||||||||||||||||||||    
T  3877637 acattattattggatgtagggtaacttcaccgaaaaaatcaattgaacgacttcaccatagaatttccc 3877569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 45346323 - 45346253
Alignment:
Q  22 ttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttcccataaataaaac 92  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |||| |||||    
T  45346323 ttggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccgtagaatttcccttaaaaaaaac 45346253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 12983569 - 12983624
Alignment:
Q  26 atgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 81  Q
    ||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  12983569 atgtaggataacttctctgaaaaagtcaatttattgacttcaccatagaatttccc 12983624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 45319662 - 45319607
Alignment:
Q  26 atgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 81  Q
    ||||||||||||||| |  |||||||||||| ||| ||||||||||||||||||||    
T  45319662 atgtaagataacttcaccaaaaaagtcaattgaatgacttcaccatagaatttccc 45319607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 52382672 - 52382608
Alignment:
Q  27 tgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttcccataaataaaa 91  Q
    |||| ||| ||||| | ||| |||||| ||||| |||||||||||||||||||||| ||||||||    
T  52382672 tgtaggattacttcaccgaagaagtcattttaacaacttcaccatagaatttcccaaaaataaaa 52382608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 47036289 - 47036348
Alignment:
Q  22 ttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 81  Q
    ||||||||| | |||||||  |||| ||||||||| ||| ||||||||||||||||||||    
T  47036289 ttggatgtatggtaacttcattgaagaagtcaattgaatgacttcaccatagaatttccc 47036348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 22105451 - 22105398
Alignment:
Q  22 ttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaa 75  Q
    ||||||||| ||||||||| | ||||||||||||| || ||||||| |||||||    
T  22105451 ttggatgtaggataacttcaccgaaaaagtcaattgaagaacttcatcatagaa 22105398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 49410546 - 49410602
Alignment:
Q  22 ttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaattt 78  Q
    ||||||||| | ||||||| | |||||||||| || || ||||||||||||||||||    
T  49410546 ttggatgtagggtaacttcaccgaaaaagtcatttgaagaacttcaccatagaattt 49410602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 39831260 - 39831200
Alignment:
Q  22 ttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccca 82  Q
    ||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  39831260 ttggatgtaggataactgctctgaaaaagtcaatttaatgacttcaccatagaatttccca 39831200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 20108090 - 20108149
Alignment:
Q  22 ttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 81  Q
    ||||||||||||||||||| |  |||||||||||| ||||||||||||||||||||||||    
T  20108090 ttggatgtaagataacttcaccaaaaaagtcaattgaataacttcaccatagaatttccc 20108149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 29835803 - 29835862
Alignment:
Q  22 ttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 81  Q
    ||||||||| | ||||||| ||||||||||||||| ||| ||||||||||||||||||||    
T  29835803 ttggatgtagggtaacttcactgaaaaagtcaattgaatgacttcaccatagaatttccc 29835862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 12945498 - 12945557
Alignment:
Q  22 ttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 81  Q
    ||||||||| |||||||||   ||||||||||||| || |||||||||||||||||||||    
T  12945498 ttggatgtaggataacttcatcgaaaaagtcaattgaacaacttcaccatagaatttccc 12945557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 29702436 - 29702389
Alignment:
Q  34 taacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 81  Q
    ||||||| | ||||||||||||| || |||||||||||||||||||||    
T  29702436 taacttcaccgaaaaagtcaattgaacaacttcaccatagaatttccc 29702389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 5234773 - 5234809
Alignment:
Q  45 aaaaagtcaatttaataacttcaccatagaatttccc 81  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  5234773 aaaaagtcaattgaataacttcaccataaaatttccc 5234809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 33213483 - 33213415
Alignment:
Q  13 acattatacttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 81  Q
    |||||||  ||||||||| | |||||||   ||||||||||||| ||| |||| |||||||||||||||    
T  33213483 acattattattggatgtatggtaacttcatcgaaaaagtcaattaaatgactttaccatagaatttccc 33213415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 20135456 - 20135515
Alignment:
Q  22 ttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 81  Q
    ||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  20135456 ttggatgtaggataactgctctgaaaaagtcaatttaatgacttcaccatagaatttccc 20135515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 55917456 - 55917400
Alignment:
Q  26 atgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccca 82  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  55917456 atgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaattcccca 55917400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 24226929 - 24226870
Alignment:
Q  22 ttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 81  Q
    ||||||||| |||||||||   ||||||||||||| || |||||||||||||||||||||    
T  24226929 ttggatgtaggataacttcatcgaaaaagtcaattgaacaacttcaccatagaatttccc 24226870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 15530107 - 15530059
Alignment:
Q  34 taacttctctgaaaaagtcaatttaataacttcaccatagaatttccca 82  Q
    ||||||| | ||||||||||||| || ||||||||||||||||||||||    
T  15530107 taacttcaccgaaaaagtcaattgaacaacttcaccatagaatttccca 15530059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 42063058 - 42063003
Alignment:
Q  26 atgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 81  Q
    ||||| ||||||||| |  |||||||||||| ||| ||||||||||||||||||||    
T  42063058 atgtaggataacttcaccaaaaaagtcaattgaatgacttcaccatagaatttccc 42063003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 45988171 - 45988116
Alignment:
Q  26 atgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 81  Q
    ||||| ||||||||| | ||||||||||||| ||| ||||||||||| ||||||||    
T  45988171 atgtaggataacttcaccgaaaaagtcaattgaatgacttcaccataaaatttccc 45988116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 47028155 - 47028101
Alignment:
Q  26 atgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttcc 80  Q
    ||||| ||||||||| |  |||||||||||| ||| |||||||||||||||||||    
T  47028155 atgtaggataacttcaccaaaaaagtcaattgaatgacttcaccatagaatttcc 47028101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 28683100 - 28683155
Alignment:
Q  22 ttggatgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaattt 78  Q
    ||||||||| ||||||||| | ||||| ||||||||||  |||||||||||||||||    
T  28683100 ttggatgtaggataacttcaccgaaaa-gtcaatttaaggacttcaccatagaattt 28683155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 1975 - 2030
Alignment:
Q  26 atgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 81  Q
    ||||| ||||||||| ||||||||||||||| ||| |||||||| |||||||||||    
T  1975 atgtaggataacttcactgaaaaagtcaattgaatgacttcaccgtagaatttccc 2030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 7124389 - 7124334
Alignment:
Q  26 atgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 81  Q
    ||||| ||||||||| ||||||||||||||| ||| |||||||| |||||||||||    
T  7124389 atgtaggataacttcactgaaaaagtcaattgaatgacttcaccgtagaatttccc 7124334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0685 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0685
Description:

Target: scaffold0685; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 6685 - 6621
Alignment:
Q  27 tgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttcccataaataaaa 91  Q
    |||| ||| ||||| | ||| |||||| ||||| |||||||||||||||||||||| ||||||||    
T  6685 tgtaggattacttcaccgaagaagtcattttaacaacttcaccatagaatttcccaaaaataaaa 6621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 7034 - 6980
Alignment:
Q  26 atgtaagataacttctctgaaaaagtcaatttaataacttcaccatagaatttcc 80  Q
    ||||| ||||||||| |  |||||||||||| ||| |||||||||||||||||||    
T  7034 atgtaggataacttcaccaaaaaagtcaattgaatgacttcaccatagaatttcc 6980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University