View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17359_low_5 (Length: 473)
Name: NF17359_low_5
Description: NF17359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17359_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 6 - 462
Target Start/End: Complemental strand, 34933099 - 34932643
Alignment:
| Q |
6 |
tgggggttagggtttaaaccttatgaattcgggattttctcttctttgatggaatgattatattagttttgatagagtgtgtttaattaattagtacata |
105 |
Q |
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| T |
34933099 |
tgggggttagggtttaaaccttgtgaattcgggattttctcttctttgatggaatgattatattagttttgatagagtgtgtttaattaattagtacata |
34933000 |
T |
|
| Q |
106 |
tcatcatcatcatctaattaccatctaacaattctgttctttcatattatctgcgaagccgactctctcccaaatcttcaacatctatagcgcaaagatg |
205 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34932999 |
tcatcatcatcatctaattaccatctaacaattttgttctttcatattatctgcgaagccgactctctcccaaatcttcaacatctatagtgcaaagatg |
34932900 |
T |
|
| Q |
206 |
agatactcagcgggatgcccatcgagatacgcacacggaataactcctgcgcacatgttcgacaacattcctgtgtttaaagccgaggcaagcttttctg |
305 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34932899 |
agatactcagcgggatgcccatcgagatacacacacggaataactcctgcgcacatgttcgacaaccttcctgtgtttaaagccgaggcaagcttttctg |
34932800 |
T |
|
| Q |
306 |
gggcctgtagcaaatgctttcttttaattctagtttcactattttagtttctttgtgcgtattctagttctttaatattacttactctttaaacccacag |
405 |
Q |
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| T |
34932799 |
gggcctgtagcaaatgctttcttttgattctagtttcacaattttagattctttgtgcgtattctagttctttaatattacttactctttaaacccacag |
34932700 |
T |
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| Q |
406 |
gatcccgaactggtatcgcttcagcaatggcttgatgaaatagaaagtgagaagaat |
462 |
Q |
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| T |
34932699 |
gatctcgaactggcatcgcttcagaaaatgcttgataaaatagaatgtgagaagaat |
34932643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 400
Target Start/End: Complemental strand, 38648688 - 38648614
Alignment:
| Q |
326 |
cttttaattctagtttcactattttagtttctttgtgcgtattctagttctttaatattacttactctttaaacc |
400 |
Q |
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||||| |||| |||||||| |||||||||||||||| | |||| | ||||||||||||| ||| ||| |||||| |
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| T |
38648688 |
cttttgattcaagtttcacaattttagtttctttgttcatatttgaattctttaatattaattaatctataaacc |
38648614 |
T |
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