View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17359_low_6 (Length: 421)
Name: NF17359_low_6
Description: NF17359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17359_low_6 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 421
Target Start/End: Complemental strand, 9441056 - 9440654
Alignment:
| Q |
19 |
atatccgaggcatgtgtcgtgcacaaaatcgcgtatggttttctcaaggttgtccaagcagaattggaatccttgcagttgtaatccttggactatacat |
118 |
Q |
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| T |
9441056 |
atatccgaggcatgtgttgtgcacaaaattgcgtatggttttctcaaggttgtccaagcagaattggaatccttgcagttgtaatccttggactatacat |
9440957 |
T |
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| Q |
119 |
aatatcatatgctcctggaatcggaacagtgccgtgggttctaaactcggagatttatcctttaaggttcagaggaataggtggaggtatagcagcagtt |
218 |
Q |
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| T |
9440956 |
aatatcatatgctcctggaatcggaacagtgccttgggttctaaactcggagatttatcctttaaggttcagaggaataggtggaggtatagcagcagtt |
9440857 |
T |
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| Q |
219 |
tgcaactggtgtgctaatttaattatgagtgagtcattcttaagcatgataaagactctaggaactactggaacattcctcacctttgcagggttctctt |
318 |
Q |
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| T |
9440856 |
ttcaactggtgtgctaatgtaattatgagtgagtcattcttaagcatgataaagactctaggaactactggaacattcctcacctttgcagggttctctt |
9440757 |
T |
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| Q |
319 |
tgattggatttgtagccatttatttgttggtgcctgaaaccaaaggtcttcagtttgaagaggttgagaaattgcttcagaaagggtttagacctttccc |
418 |
Q |
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| T |
9440756 |
tgattggatttgtagccatttatttgttggtgcctgaaaccaaaggtcttcagtttgaggaggttgagaaattgcttcagaaagggtttagacctttccc |
9440657 |
T |
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| Q |
419 |
att |
421 |
Q |
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| T |
9440656 |
att |
9440654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 421
Target Start/End: Complemental strand, 9452282 - 9451880
Alignment:
| Q |
19 |
atatccgaggcatgtgtcgtgcacaaaatcgcgtatggttttctcaaggttgtccaagcagaattggaatccttgcagttgtaatccttggactatacat |
118 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9452282 |
atatccgaggcatgtgtcgtgcacaaaaacgtgtatggttttcccaaggttgtccaagcagaattggaatccttgcagttgtaatccttggactatacat |
9452183 |
T |
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| Q |
119 |
aatatcatatgctcctggaatcggaacagtgccgtgggttctaaactcggagatttatcctttaaggttcagaggaataggtggaggtatagcagcagtt |
218 |
Q |
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| T |
9452182 |
catagcatatgctcctggaattggaacagtgccttgggttctaaactcggagatttatccattgcggttcagaggaataggtggaggtatagcagcagtt |
9452083 |
T |
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| Q |
219 |
tgcaactggtgtgctaatttaattatgagtgagtcattcttaagcatgataaagactctaggaactactggaacattcctcacctttgcagggttctctt |
318 |
Q |
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| T |
9452082 |
ttcaactggtgtgccaatctaattgtgagtgagtcattcttgagcatgataaaggctctaggaactaccggaacattcctcctctttgcagggttctctt |
9451983 |
T |
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| Q |
319 |
tgattggatttgtagccatttatttgttggtgcctgaaaccaaaggtcttcagtttgaagaggttgagaaattgcttcagaaagggtttagacctttccc |
418 |
Q |
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||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
9451982 |
tgattggccttgtagccatttatttgttagtgcctgaaaccaaaggccttcagtttgaggaggttgagaaattgcttcaaaaagggtttagacctttccc |
9451883 |
T |
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| Q |
419 |
att |
421 |
Q |
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||| |
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| T |
9451882 |
att |
9451880 |
T |
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