View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17359_low_7 (Length: 317)
Name: NF17359_low_7
Description: NF17359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17359_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 15 - 301
Target Start/End: Complemental strand, 4123188 - 4122902
Alignment:
| Q |
15 |
agagataaagagaaaatgaagtgttaaatgagtgtttggaaaattggggtgtccaaatatcattgttttaatttttactgatcaaaatacgaataattat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4123188 |
agagataaagagaaaatgaagtgttaaatgagtgtttggaaaattggggtgtccaaatatcattgttttaatttttactgatcaaaatacgaataattat |
4123089 |
T |
|
| Q |
115 |
cttatgaggagtattatatcattgttaaatgattgtgatattagtatttatttccacttttttacagaatttgactgtcgatgggcgtggtagttttttg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||| ||||| |
|
|
| T |
4123088 |
cttatgaggagtattatatcattgttaaatgattgtgatattagtgtttatttccacttttttacagaatttgactgtcgacgggggtggtagtgttttg |
4122989 |
T |
|
| Q |
215 |
ctcccctgtgataattgcccaaattggttaagtttcaactccaaaggttattctgtagtttttgaagtccctcaagtggaaggacgt |
301 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4122988 |
ctcccctgtgataattacccaaattggttaagtttcaactccaaaggttattctgttgtttttgaagtccctcaagtggaaggacgt |
4122902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 163 - 298
Target Start/End: Original strand, 4362452 - 4362586
Alignment:
| Q |
163 |
tatttccacttttttacagaatttgactgtcgatgggcgtggtagttttttgctcccctgtgataattgcccaaattggttaagtttcaactccaaaggt |
262 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||| |||||||| |
|
|
| T |
4362452 |
tatttccactttt-tacagaatttgactgtcgatgggcgtggtagttttttgctccctggtgatgattacccaaattggttaagtttcaacgccaaaggt |
4362550 |
T |
|
| Q |
263 |
tattctgtagtttttgaagtccctcaagtggaagga |
298 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4362551 |
tattctgtaatttttgaagtccctcaagtggaagga |
4362586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 173 - 299
Target Start/End: Original strand, 4346265 - 4346391
Alignment:
| Q |
173 |
tttttacagaatttgactgtcgatgggcgtggtagttttttgctcccctgtgataattgcccaaattggttaagtttcaactccaaaggttattctgtag |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
4346265 |
tttttacagaatttgactgtcgatgggcgtggtagttttttgctccccggtgataattacccaaattggtcaactttcaactccaaaggttattctgtaa |
4346364 |
T |
|
| Q |
273 |
tttttgaagtccctcaagtggaaggac |
299 |
Q |
| |
|
| ||||||||||||||||||||||||| |
|
|
| T |
4346365 |
tctttgaagtccctcaagtggaaggac |
4346391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 163 - 301
Target Start/End: Original strand, 4336802 - 4336939
Alignment:
| Q |
163 |
tatttccacttttttacagaatttgactgtcgatgggcgtggtagttttttgctcccctgtgataattgcccaaattggttaagtttcaactccaaaggt |
262 |
Q |
| |
|
|||||||||||| | ||||||| |||||||||||||| ||||||| |||||||||||| ||||| ||| ||||||||||||| ||||||||| |||||| |
|
|
| T |
4336802 |
tatttccactttct-acagaatgtgactgtcgatgggtgtggtagctttttgctccccagtgatgattacccaaattggttagctttcaactcgaaaggt |
4336900 |
T |
|
| Q |
263 |
tattctgtagtttttgaagtccctcaagtggaaggacgt |
301 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
4336901 |
tattctgtaaattttgaagtccctcatgtggaaggacgt |
4336939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 175 - 301
Target Start/End: Complemental strand, 4319686 - 4319560
Alignment:
| Q |
175 |
tttacagaatttgactgtcgatgggcgtggtagttttttgctcccctgtgataattgcccaaattggttaagtttcaactccaaaggttattctgtagtt |
274 |
Q |
| |
|
|||||||||||||||| |||||| || |||| |||||| ||||| |||||||||| ||| |||||||| |||||| || |||||| ||||||| || |
|
|
| T |
4319686 |
tttacagaatttgactatcgatgagcatggtcgtttttcactcccttgtgataattacccggattggttagctttcaattcagaaggttcttctgtaatt |
4319587 |
T |
|
| Q |
275 |
tttgaagtccctcaagtggaaggacgt |
301 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
4319586 |
tttgaagtccctcaagtggaaggacgt |
4319560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 41 - 133
Target Start/End: Original strand, 4336662 - 4336751
Alignment:
| Q |
41 |
aatgagtgtttggaaaattggggtgtccaaatatcattgttttaatttttactgatcaaaatacgaataattatcttatgaggagtattatat |
133 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||| ||||||||| | |||||||||| |||||||||| |||||| | |||||| |
|
|
| T |
4336662 |
aatgattgtttcgaaaattggggtgtccaaatatcattgttgtaatttttatttatcaaaatac---taattatcttttgaggaatgttatat |
4336751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 295
Target Start/End: Complemental strand, 47985778 - 47985657
Alignment:
| Q |
174 |
ttttacagaatttgactgtcgatgggcgtggtagttttttgctcccctgtgataattgcccaaattggttaagtttcaactccaaaggttattctgtagt |
273 |
Q |
| |
|
||||||||||| || |||| ||||| ||| | ||| ||||||||| |||||| || ||||||||||||| || || || |||||| ||| ||| |
|
|
| T |
47985778 |
ttttacagaatatggctgttaatgggagtgattgttgtttgctccctggtgatagttatccaaattggttaacctttaattctgaaggttcttcggtaac |
47985679 |
T |
|
| Q |
274 |
ttttgaagtccctcaagtggaa |
295 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
47985678 |
ttttgaagtccctcaagtggaa |
47985657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 295
Target Start/End: Complemental strand, 47995065 - 47994944
Alignment:
| Q |
174 |
ttttacagaatttgactgtcgatgggcgtggtagttttttgctcccctgtgataattgcccaaattggttaagtttcaactccaaaggttattctgtagt |
273 |
Q |
| |
|
||||||||||| || |||| ||||| ||| | ||| ||||||||| |||||| || ||||||||||||| || || || |||||| ||| ||| |
|
|
| T |
47995065 |
ttttacagaatatggctgttaatgggagtgattgttgtttgctccctggtgatagttatccaaattggttaacctttaattctgaaggttcttcggtaac |
47994966 |
T |
|
| Q |
274 |
ttttgaagtccctcaagtggaa |
295 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
47994965 |
ttttgaagtccctcaagtggaa |
47994944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 295
Target Start/End: Complemental strand, 48004352 - 48004231
Alignment:
| Q |
174 |
ttttacagaatttgactgtcgatgggcgtggtagttttttgctcccctgtgataattgcccaaattggttaagtttcaactccaaaggttattctgtagt |
273 |
Q |
| |
|
||||||||||| || |||| ||||| ||| | ||| ||||||||| |||||| || ||||||||||||| || || || |||||| ||| ||| |
|
|
| T |
48004352 |
ttttacagaatatggctgttaatgggagtgattgttgtttgctccctggtgatagttatccaaattggttaacctttaattctgaaggttcttcggtaac |
48004253 |
T |
|
| Q |
274 |
ttttgaagtccctcaagtggaa |
295 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
48004252 |
ttttgaagtccctcaagtggaa |
48004231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 295
Target Start/End: Complemental strand, 48013637 - 48013516
Alignment:
| Q |
174 |
ttttacagaatttgactgtcgatgggcgtggtagttttttgctcccctgtgataattgcccaaattggttaagtttcaactccaaaggttattctgtagt |
273 |
Q |
| |
|
||||||||||| || |||| ||||| ||| | ||| ||||||||| |||||| || ||||||||||||| || || || |||||| ||| ||| |
|
|
| T |
48013637 |
ttttacagaatatggctgttaatgggagtgattgttgtttgctccctggtgatagttatccaaattggttaacctttaattctgaaggttcttcggtaac |
48013538 |
T |
|
| Q |
274 |
ttttgaagtccctcaagtggaa |
295 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
48013537 |
ttttgaagtccctcaagtggaa |
48013516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University