View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17359_low_9 (Length: 278)
Name: NF17359_low_9
Description: NF17359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17359_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 40 - 190
Target Start/End: Complemental strand, 32330680 - 32330531
Alignment:
| Q |
40 |
ggttgaataacaaaaggaagtgaaagttaaggtggattagaaacttgaatactgcataagctgaattggccaaggaattggtgtgagtgttaacaaatgt |
139 |
Q |
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| T |
32330680 |
ggttgaataacaaaaggaagtgaaagtttaggtggattagaaatttgaatactgcataagctgaattggccaaggaattggtgtgagtgttaac-aatgt |
32330582 |
T |
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| Q |
140 |
ctagcctaagtgagtgtgttaatccatttgaaaatagaatcccaaattatc |
190 |
Q |
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| T |
32330581 |
ctagcctaagtgagtgtgttaatcaatttgaaaatagaatcccaaattatc |
32330531 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 8344657 - 8344616
Alignment:
| Q |
211 |
caaaactaccacctccactgctagaacctccatttccaccac |
252 |
Q |
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| T |
8344657 |
caaaactaccacctccactgctagaacctccatttccaccac |
8344616 |
T |
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