View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17360_high_18 (Length: 338)
Name: NF17360_high_18
Description: NF17360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17360_high_18 |
 | |
|
| [»] scaffold1717 (1 HSPs) |
| | |
|
| [»] scaffold1527 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 22 - 254
Target Start/End: Original strand, 37757269 - 37757501
Alignment:
| Q |
22 |
catcatcatcagcatcatgatactcatcttcatgttcttcctcaataacaggatgaagctcaactttttcaccatcattcccttcaactccggcgccgcc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
37757269 |
catcatcatcagcatcatgatactcatcttcatgttcttcctcaataacaggatgaagttcaactttttcaccatcattcccttcaactccggcgccacc |
37757368 |
T |
|
| Q |
122 |
gccattactctcctccggataccttacaactacaacgggacaaacacaatgacgaacacaataatcactcacacttccaagcttcccattagaacttctc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37757369 |
gccattactctcctccggataccttacaactacaacaggacaaacacaatgacgaacacaataatcactcacacttccaagcttcccattagaacttctc |
37757468 |
T |
|
| Q |
222 |
ttagtcgcaccgagtccacggcttcccataatc |
254 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||| |
|
|
| T |
37757469 |
ttcgtcgcaccgaatccacggcttcccataatc |
37757501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1717 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1717
Description:
Target: scaffold1717; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 397 - 460
Alignment:
| Q |
147 |
acaactacaacgggacaaacacaatgacgaacacaataatcactcacacttccaagcttcccat |
210 |
Q |
| |
|
||||| ||||| ||||||||||||||| | ||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
397 |
acaacaacaacaggacaaacacaatgatgcacacagtaatcactaacactcccaagcttcccat |
460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1527 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1527
Description:
Target: scaffold1527; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 643 - 706
Alignment:
| Q |
147 |
acaactacaacgggacaaacacaatgacgaacacaataatcactcacacttccaagcttcccat |
210 |
Q |
| |
|
||||| ||||| ||||||||||||||| | ||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
643 |
acaacaacaacaggacaaacacaatgatgcacacagtaatcactaacactcccaagcttcccat |
706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University