View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17360_high_19 (Length: 337)

Name: NF17360_high_19
Description: NF17360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17360_high_19
NF17360_high_19
[»] chr5 (1 HSPs)
chr5 (21-337)||(29100598-29100914)


Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 21 - 337
Target Start/End: Complemental strand, 29100914 - 29100598
Alignment:
Q  21 acatcatcaacatcaaaaggacacgaaaagtcaccatcatccaagtcatcctgaaaagataatctactacttgatgttctcgaagctccaatgcgtggtg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29100914 acatcatcaacatcaaaaggacacgaaaagtcaccatcatccaagtcatcctgaaaagataatctactacttgatgttctcgaagctccaatgcgtggtg 29100815  T
Q  121 agtcactagaagataacaatccagagaaccgccccgaatcatccttgctatctctgacaatctgtgaagcaaaaataaaggcttatcaaacagataaaac 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29100814 agtcactagaagataacaatccagagaaccgccccgaatcatccttgctatctctgacaatctgtgaagcaaaaataaaggcttatcaaacagataaaac 29100715  T
Q  221 acatttcatttaaaactttaggattagaaatgaagggccaattaaggttaccttttgaccaatctttagagattctattttcctgaatgacctgattcca 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29100714 acatttcatttaaaactttaggattagaaatgaagggccaattaaggttaccttttgaccaatctttagagattctattttcctgaatgacctgattcca 29100615  T
Q  321 gatggagactcatgtga 337  Q
    |||||||||||||||||    
T  29100614 gatggagactcatgtga 29100598  T

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