View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17360_high_1_N (Length: 496)
Name: NF17360_high_1_N
Description: NF17360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17360_high_1_N |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 29 - 492
Target Start/End: Original strand, 4534718 - 4535177
Alignment:
| Q |
29 |
atacttatgtattataagtagtataaatattttcaatttgctgctctgtaggttgcttttaataacggtattgatctcgctggaaaccccagcagaatga |
128 |
Q |
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||||||||||| | || ||||||||||||||| |||| ||| ||||||||||||||||||| || ||||||||||||| |||||| || ||||||||| |
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| T |
4534718 |
atacttatgtactctatgtagtataaatatttataattggcttttctgtaggttgcttttaatcaccgtattgatctcgcaggaaactcctgcagaatga |
4534817 |
T |
|
| Q |
129 |
cgtcgatgatggacaagatctcgacctttccatccttagatgctcaacttattcattgctcaattttatttataaaaaatctgaatttatattcattgat |
228 |
Q |
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||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4534818 |
cgttgatgacagacaagatctcgacctttccatccttagatgctcaacttattcattgctcaattttatttataaaaaatctgaatttatattcattgat |
4534917 |
T |
|
| Q |
229 |
agttccattcatttcttttgtagtgacatttgaatcatcaagagatttttaatctattgttgagaagaacttttttgattagtttctcttttatctatgt |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4534918 |
agttccattcatttcttttgtagtgacatttgaatcatcaagagatttttaatctattgttgagaagaacttttttgattagtttctcttttatctatgt |
4535017 |
T |
|
| Q |
329 |
aatattcttcgacatcgacttttatctactgtggttattcgatgattattagctaatgttgtgtaatggaactaaagttgattaaatggtatgtgttgga |
428 |
Q |
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|||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4535018 |
aatattgtttg----tgacttttatctactgtggttattcgatgattattagctaatgttgtgtaatggaactaaagttgattaaatggtatgtgttgga |
4535113 |
T |
|
| Q |
429 |
cgatgactttatttggaagaagataatcatatttaaattatatatgaattacatcatatcttaa |
492 |
Q |
| |
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| T |
4535114 |
cgatgactttatttggaagaagataatcatatttaaattatatatgaattacatcatatcttaa |
4535177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 360 - 492
Target Start/End: Original strand, 48867445 - 48867578
Alignment:
| Q |
360 |
tggttattcgatgattattagctaatgttgtgtaatggaactaaagttgattaaatggtatgtgttggacgatgac---tttatttggaagaagataatc |
456 |
Q |
| |
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|||||||| |||||||||||| ||||||||||||||||||||||||| || |||| | || | |||| ||||||| |||||||| ||| |||||||| |
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| T |
48867445 |
tggttatttgatgattattagttaatgttgtgtaatggaactaaagtcgagtaaaagtta--tattggtcgatgacttttttatttgaaaggagataatc |
48867542 |
T |
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| Q |
457 |
atatttaaattatatatgaattacatcatatcttaa |
492 |
Q |
| |
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||||||||||||| |||||||||||| |||| |||| |
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| T |
48867543 |
atatttaaattatctatgaattacattatattttaa |
48867578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 334
Target Start/End: Original strand, 48867392 - 48867420
Alignment:
| Q |
306 |
attagtttctcttttatctatgtaatatt |
334 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
48867392 |
attagtttctcttttatctatgtaatatt |
48867420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 190 - 334
Target Start/End: Complemental strand, 24062043 - 24061896
Alignment:
| Q |
190 |
aattttatttataaaaaatctgaatttatattcattgatagtt-ccattcatttcttttgtagtgacatttgaatc-atcaagagatttttaatctattg |
287 |
Q |
| |
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||||||||||| | |||| | |||||||||||||| ||| || ||||||||||||||| ||||| |||||| | | |||||||||| || ||||||||| |
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| T |
24062043 |
aattttatttactagaaatataaatttatattcattaatattttccattcatttcttttttagtggcatttggagccatcaagagatgttgaatctattg |
24061944 |
T |
|
| Q |
288 |
ttgagaagaac-ttttttgattagtttctcttttatctatgtaatatt |
334 |
Q |
| |
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|||| || ||| |||||| |||||||| || ||||| ||||||||||| |
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| T |
24061943 |
ttgaaaaaaacttttttttattagtttatcgtttatttatgtaatatt |
24061896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 384 - 492
Target Start/End: Complemental strand, 21489900 - 21489791
Alignment:
| Q |
384 |
atgttgtgtaatggaactaaagttgattaaatggtatgtgttggacgatgacttt---atttggaagaagataatcatatttaaattatatatgaattac |
480 |
Q |
| |
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|||||||||||| |||||||||| || |||||||||||| || || ||||||| ||||| || |||||| ||||||||||||||| ||||||||| |
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| T |
21489900 |
atgttgtgtaattgaactaaagtggactaaatggtatgt--tgttcgttgactttttgatttgtaataagatattcatatttaaattatctatgaattaa |
21489803 |
T |
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| Q |
481 |
atcatatcttaa |
492 |
Q |
| |
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|| ||||||||| |
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| T |
21489802 |
attatatcttaa |
21489791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 323
Target Start/End: Original strand, 3975660 - 3975751
Alignment:
| Q |
234 |
cattcatttcttttgtagtgacatttgaa-tcatcaagagatttttaatctattgttgagaag-aacttttttgattagtttctcttttatc |
323 |
Q |
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||||||||||||||||||| | |||| | | |||||||||| || ||||||||||||||||| || |||||||| || ||| ||||||||| |
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| T |
3975660 |
cattcatttcttttgtagttaactttggagttatcaagagatgttgaatctattgttgagaagtaatttttttgactactttatcttttatc |
3975751 |
T |
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