View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17360_high_2 (Length: 487)
Name: NF17360_high_2
Description: NF17360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17360_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 104 - 463
Target Start/End: Complemental strand, 28536805 - 28536446
Alignment:
| Q |
104 |
tcatcaatgacaaatatataggaatttggtttgaatattcatatggaatttcaaagcggccaaccttatatctttcatggtaattactaattatacatag |
203 |
Q |
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| T |
28536805 |
tcatcaatgacaaatatacaggaatttggtttgaatattcatatggaatttcaaagcggccaaccttatatctttcatggtaattactaattatacatag |
28536706 |
T |
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| Q |
204 |
tagagtggatcgagtttcgaaacacgtaatgtttcctggttaattcagtggaaatttttatttgacaagcttgaatatgtttcattgtgttgaggagaat |
303 |
Q |
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| T |
28536705 |
tagagtggatccagtttcgaaacacgtaatgtttcctggttaattcagtggaaatttttatttgacaagcttgaatatgttttattgtgttgaggagaat |
28536606 |
T |
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| Q |
304 |
gaaagtactatatgacatctacaaactttttgtgtcgttcttcctccttgctttcttcgcacgctcaacctcagccgtttcatctatcaaccacacatta |
403 |
Q |
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| T |
28536605 |
gaaagtactatatgacatctacaaactttttgtgtcgttcttccttcttgcgttcttcgcacgctcaacgtcagccgtttcatctatcaaccacacatta |
28536506 |
T |
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| Q |
404 |
tcatactctcgagtctggtttttggttttgaaatttcagagcattactttatactgatga |
463 |
Q |
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| T |
28536505 |
tcatactctcgagtctggtttttggttttgaaatttcagagcattactttatactgatga |
28536446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 28536941 - 28536875
Alignment:
| Q |
14 |
gaacctgtgataatttcatcaataaccctttggtttaactccatgattaatatacaggagtcattct |
80 |
Q |
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| T |
28536941 |
gaacctgtgataatttcatcaataaccctttggtttaactccatgattaatatacaggagtcattct |
28536875 |
T |
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