View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17360_high_20 (Length: 329)
Name: NF17360_high_20
Description: NF17360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17360_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 7 - 320
Target Start/End: Complemental strand, 26076517 - 26076203
Alignment:
| Q |
7 |
ttgaataggtagccataagtgcttctcctatccattctatctccacatcagtctgaatcagagtatccctctagcttagcctctcttttcttgttagtag |
106 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||| |||| ||||||||||||||||||||||||| | ||| |||| | || || | || |
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| T |
26076517 |
ttgaataggtagccataagtgctcttcctatccattatatcttcacaccagtctgaatcagagtatccctctaattcagcttctcctactttatttgcag |
26076418 |
T |
|
| Q |
107 |
ctggaaacatcaggccaaacttcaaggt-cctttcacatttctcagtattcttttagctgcagcgagatgggatttccttggatcattcatgaatctact |
205 |
Q |
| |
|
||||||| | ||||||||||||||| || |||||||||| ||||| ||||||||||||||||| |||||| || |||||||||||||||||||||||||| |
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|
| T |
26076417 |
ctggaaataacaggccaaacttcaatgtacctttcacatatctcaatattcttttagctgcagtgagatgagacttccttggatcattcatgaatctact |
26076318 |
T |
|
| Q |
206 |
gatgatacttactacaaagcatatatctggtctgctattgcataagtacctcaatgatcccactatctgtttgaattcagtaggttctactctttcttca |
305 |
Q |
| |
|
||| ||||||||| |||||||||||||||||||| | ||||||||||| || | ||||||||||||||||||||||||||||| || | |||||||| |
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| T |
26076317 |
gattatacttactgcaaagcatatatctggtctgttgttgcataagtatcttagtgatcccactatctgtttgaattcagtagactccgccttttcttca |
26076218 |
T |
|
| Q |
306 |
ttactacattcatct |
320 |
Q |
| |
|
||||||||||||||| |
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|
| T |
26076217 |
ttactacattcatct |
26076203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 85 - 319
Target Start/End: Original strand, 32368534 - 32368769
Alignment:
| Q |
85 |
gcctctcttttcttgttagtagctggaaacatcaggccaaacttcaaggt-cctttcacatttctcagtattcttttagctgcagcgagatgggatttcc |
183 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||| ||| |||||||||| ||||||||||||||||||| ||| |||||| ||||||| |
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|
| T |
32368534 |
gcctctcctttcttgttagtagctggaaacatcagggcaaacttcagggttcctttcacatatctcagtattcttttagctacagtgagatgagatttcc |
32368633 |
T |
|
| Q |
184 |
ttggatcattcatgaatctactgatgatacttactacaaagcatatatctggtctgctattgcataagtacctcaatgatcccactatctgtttgaattc |
283 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||| ||||| ||||||||||| || | |||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
32368634 |
ttggatcattcatgaacctaccgatgatacttactgcaaaggatatatctggtttgttgttgcataagtacatcaatgatcccactatctgtttgaattc |
32368733 |
T |
|
| Q |
284 |
agtaggttctactctttcttcattactacattcatc |
319 |
Q |
| |
|
|||||||| |||||||||||||||| |||| ||||| |
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|
| T |
32368734 |
agtaggttttactctttcttcattagtacactcatc |
32368769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 32368399 - 32368525
Alignment:
| Q |
4 |
aatttgaataggtagccataagtgcttctcctatccattctatctccacatcagtctgaatcagagtatccctctagcttagcctctcttttcttgttag |
103 |
Q |
| |
|
|||||||||||| ||||| |||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||| ||||||||||| |
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|
| T |
32368399 |
aatttgaataggcagccagaagtacttctcctatccattctatctccacaccggtctgaatcagagtatccctctagcttagactctcctttcttgttag |
32368498 |
T |
|
| Q |
104 |
tagctggaaacatcaggccaaacttca |
130 |
Q |
| |
|
|||||||||||||| ||||||||||| |
|
|
| T |
32368499 |
tagctggaaacatcgtgccaaacttca |
32368525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 7 - 320
Target Start/End: Original strand, 4958422 - 4958736
Alignment:
| Q |
7 |
ttgaataggtagccataagtgcttctcctatccattctatctccacatcagtctgaatcagagtatccctctagcttagcctctcttttcttgttagtag |
106 |
Q |
| |
|
||||||||||||| | | |||||| | |||||||||||||||||||| |||||||||||||||||||||||||| | ||| |||| || ||||| | || |
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|
| T |
4958422 |
ttgaataggtagctaaaggtgctttttctatccattctatctccacaccagtctgaatcagagtatccctctagttcagcttctccttctttgtttgcag |
4958521 |
T |
|
| Q |
107 |
ctggaaacatcaggccaaacttcaaggt-cctttcacatttctcagtattcttttagctgcagcgagatgggatttccttggatcattcatgaatctact |
205 |
Q |
| |
|
||| || | |||||||||||||| || |||||||||| ||||| ||| ||||| ||||||| |||||| | |||||||||||||||||||||||||| |
|
|
| T |
4958522 |
ttgggaataacaggccaaacttcagtgtgcctttcacatgtctcaatatcctttttgctgcagtgagatgaaacttccttggatcattcatgaatctact |
4958621 |
T |
|
| Q |
206 |
gatgatacttactacaaagcatatatctggtctgctattgcataagtacctcaatgatcccactatctgtttgaattcagtaggttctactctttcttca |
305 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||| | ||||||||||| |||||||||||||||||||||||||||| ||||| || || |||||||| |
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|
| T |
4958622 |
gatgatacttactgcaaagcatatatatggtctgttgttgcataagtatctcaatgatcccactatctgtttgaatttagtagactccaccttttcttca |
4958721 |
T |
|
| Q |
306 |
ttactacattcatct |
320 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
4958722 |
ttactgcattcatct |
4958736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 5e-53; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 135 - 320
Target Start/End: Complemental strand, 12370803 - 12370618
Alignment:
| Q |
135 |
cctttcacatttctcagtattcttttagctgcagcgagatgggatttccttggatcattcatgaatctactgatgatacttactacaaagcatatatctg |
234 |
Q |
| |
|
|||||||||| ||||| ||| ||||| | ||||| |||||| || |||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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|
| T |
12370803 |
cctttcacatatctcaatatcctttttgatgcagtgagatgagacttccttggatcattcatgcatctactgatgatacttactgcaaagcatatatctg |
12370704 |
T |
|
| Q |
235 |
gtctgctattgcataagtacctcaatgatcccactatctgtttgaattcagtaggttctactctttcttcattactacattcatct |
320 |
Q |
| |
|
||||||| ||||||||||| |||| |||||||||||| |||||||||||||||| || || ||||||||||||| ||||||||| |
|
|
| T |
12370703 |
gtctgctgttgcataagtatctcagtgatcccactatatgtttgaattcagtagactccaccttttcttcattactgcattcatct |
12370618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 12370945 - 12370874
Alignment:
| Q |
7 |
ttgaataggtagccataagtgcttctcctatccattctatctccacatcagtctgaatcagagtatccctctag |
80 |
Q |
| |
|
||||||||||||| | | |||||| |||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12370945 |
ttgaataggtagctagaggtgcttttcct--ccattctatctccacaccagtctgaatcagagtatccctctag |
12370874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 280
Target Start/End: Original strand, 38100001 - 38100050
Alignment:
| Q |
231 |
tctggtctgctattgcataagtacctcaatgatcccactatctgtttgaa |
280 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| || ||||| |||||||| |
|
|
| T |
38100001 |
tctggcctgctattgcataagtatctcaatgacccaactatttgtttgaa |
38100050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 23 - 320
Target Start/End: Complemental strand, 5243310 - 5243013
Alignment:
| Q |
23 |
aagtgcttctcctatccattctatctccacatcagtctgaatcagagtatccctctagcttagcctctcttttcttgttagtagctggaaacatcaggcc |
122 |
Q |
| |
|
|||||||||| ||||||||||| | |||||| ||||| ||||| |||||||| ||||||||||||| || || ||| || || || || || || || |
|
|
| T |
5243310 |
aagtgcttcttctatccattctctatccacaccagtcagaatctgagtatccttctagcttagcctttccttcattgctatcagttgtaagcaacaaacc |
5243211 |
T |
|
| Q |
123 |
aaacttca-aggtcctttcacatttctcagtattcttttagctgcagcgagatgggatttccttggatcattcatgaatctactgatgatacttactaca |
221 |
Q |
| |
|
|||||| | || ||||||||||| ||||| |||| |||| ||||||| |||||| || ||||||||||||||||||||||| || |||||||||||| || |
|
|
| T |
5243210 |
aaactttagagttcctttcacatatctcattattattttggctgcagtgagatgagacttccttggatcattcatgaatcttctaatgatacttactgca |
5243111 |
T |
|
| Q |
222 |
aagcatatatctggtctgctattgcataagtacctcaatgatcccactatctgtttgaattcagtaggttctactctttcttcattactacattcatct |
320 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| ||| ||| ||| | |||||| |||||||||||||||||||| | |||||||| | ||||||||| |
|
|
| T |
5243110 |
aagcatatatctggtctactattacataagtatctc-atggtcctattatctgcatgaattcagtaggttctactttctcttcattgatgcattcatct |
5243013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 134 - 319
Target Start/End: Complemental strand, 1182943 - 1182758
Alignment:
| Q |
134 |
tcctttcacatttctcagtattcttttagctgcagcgagatgggatttccttggatcattcatgaatctactgatgatacttactacaaagcatatatct |
233 |
Q |
| |
|
||||||||||| ||| || | |||||||||||||| |||||| |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
1182943 |
tcctttcacatatcttagcactcttttagctgcagtgagatgagatttcctaggatcattcatgtatctactgatgatacttaccgcaaagcatatatca |
1182844 |
T |
|
| Q |
234 |
ggtctgctattgcataagtacctcaatgatcccactatctgtttgaattcagtaggttctactctttcttcattactacattcatc |
319 |
Q |
| |
|
|||||| ||||||||| | | |||| ||||| |||||| ||||||||| |||| ||||||| | |||||||| ||||||||||| |
|
|
| T |
1182843 |
ggtctgttattgcataggcatctcagagatccaactatcggtttgaattatgtagcttctactttctcttcattgctacattcatc |
1182758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 9636687 - 9636619
Alignment:
| Q |
191 |
attcatgaatctactgatgatacttactacaaagcatatatctggtctgctattgcataagtacctcaa |
259 |
Q |
| |
|
||||||| |||||||| ||| |||| | |||||||||| || |||||| ||||||||||||| ||||| |
|
|
| T |
9636687 |
attcatgtatctactggtgaagcttatttcaaagcatatgtcaggtctggtattgcataagtatctcaa |
9636619 |
T |
|
Back To:
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