View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17360_high_28 (Length: 314)

Name: NF17360_high_28
Description: NF17360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17360_high_28
NF17360_high_28
[»] chr3 (5 HSPs)
chr3 (10-314)||(24638051-24638355)
chr3 (10-314)||(24646984-24647284)
chr3 (187-314)||(20620670-20620798)
chr3 (166-233)||(20619706-20619773)
chr3 (225-314)||(48099378-48099468)
[»] scaffold0197 (2 HSPs)
scaffold0197 (166-233)||(7237-7304)
scaffold0197 (92-148)||(7339-7395)
[»] chr8 (3 HSPs)
chr8 (166-227)||(15935270-15935331)
chr8 (225-292)||(40270352-40270420)
chr8 (226-292)||(19183626-19183693)
[»] scaffold0009 (1 HSPs)
scaffold0009 (225-292)||(32119-32187)
[»] chr1 (5 HSPs)
chr1 (225-314)||(9932096-9932186)
chr1 (225-314)||(44387578-44387668)
chr1 (225-292)||(24210233-24210301)
chr1 (236-292)||(45030010-45030066)
chr1 (236-292)||(45034861-45034917)
[»] scaffold0936 (1 HSPs)
scaffold0936 (225-314)||(3569-3658)
[»] scaffold0655 (1 HSPs)
scaffold0655 (236-292)||(5642-5698)
[»] scaffold0134 (1 HSPs)
scaffold0134 (225-292)||(41037-41105)
[»] chr6 (3 HSPs)
chr6 (225-292)||(16594886-16594954)
chr6 (236-292)||(33166251-33166307)
chr6 (193-239)||(21875304-21875350)
[»] chr5 (1 HSPs)
chr5 (225-272)||(1545864-1545912)
[»] chr2 (1 HSPs)
chr2 (225-270)||(40623336-40623381)


Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 10 - 314
Target Start/End: Original strand, 24638051 - 24638355
Alignment:
Q  10 ctagctgttgcaaacagtgtaactgagcatacttgaattaatctgttgcttgcagacttgaattacaaaaggaggtactaattaaaggaattcaatccgt 109  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24638051 ctagctgatgcaaacagtgtaactgagcatacttgaattaatctgttgcttgcagacttgaattacaaaaggaggtactaattaaaggaaatcaatccgt 24638150  T
Q  110 gaattttatttgtaatgatcaagagtatatatacagttacaagtggagtcaaacatgagagtaattacaaaataattaccaacataactactaacataat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24638151 gaattttatttgtaatgatcaagagtatatatacagttacaagtggagtcaaacatgagagtaattacaaaataattaccaacataactactaacataat 24638250  T
Q  210 tacataaagtcaaacattctatcacaccccgcagttgaagcgggaggtttacggacgcttagaatggtatgaaaatcatcaaaatgaactcaaagtaggc 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24638251 tacataaagtcaaacattctatcacaccccgcagttgaagcgggaggtttacggacgcttagaatggtctgaaaatcatcaaaatgaactcaaagtaggc 24638350  T
Q  310 ctttg 314  Q
    |||||    
T  24638351 ctttg 24638355  T

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Target: chr3; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 10 - 314
Target Start/End: Original strand, 24646984 - 24647284
Alignment:
Q  10 ctagctgttgcaaacagtgtaactgagcatacttgaattaatctgttgcttgcagacttgaattacaaaaggaggtactaattaaaggaattcaatccgt 109  Q
    ||||||| ||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24646984 ctagctgatgcaaacagtgtaactgagcatacttgaat----ctgttgcttgcagacttgaattacaaaaggaggtactaattaaaggaaatcaatccgt 24647079  T
Q  110 gaattttatttgtaatgatcaagagtatatatacagttacaagtggagtcaaacatgagagtaattacaaaataattaccaacataactactaacataat 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24647080 gaattttatttgtaatgatcaagagtatatatacagttacaagtggagtcaaacatgagagtaattacaaaataattaccaacatagctactaacataat 24647179  T
Q  210 tacataaagtcaaacattctatcacaccccgcagttgaagcgggaggtttacggacgcttagaatggtatgaaaatcatcaaaatgaactcaaagtaggc 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  24647180 tacataaagtcaaacattctatcacaccccgcagttgaagcgggaggtttacggacgcttagaatggtctgaaaatcatcaaaaagaactcaaagtaggc 24647279  T
Q  310 ctttg 314  Q
    |||||    
T  24647280 ctttg 24647284  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 187 - 314
Target Start/End: Complemental strand, 20620798 - 20620670
Alignment:
Q  187 accaacataactactaacataattacataaagtcaaacattctatcacacc-ccgcagttgaagcgggaggtttacggacgcttagaatggtatgaaaat 285  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||| ||| ||| ||||||||||||| ||| ||||||| | ||||  ||||||    
T  20620798 accaacataattactaacataattacataaagtcaaacattctatcatacctccgaagtcgaagcgggaggttcacgaacgcttaaactggttcgaaaat 20620699  T
Q  286 catcaaaatgaactcaaagtaggcctttg 314  Q
     ||||||| |||||| | || ||||||||    
T  20620698 tatcaaaaagaactcgaggttggcctttg 20620670  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 20619773 - 20619706
Alignment:
Q  166 gagagtaattacaaaataattaccaacataactactaacataattacataaagtcaaacattctatca 233  Q
    ||||||||||| |||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||    
T  20619773 gagagtaattaaaaaataataaccaacgtaaatactaacataattacataaagtcaaacattctatca 20619706  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 314
Target Start/End: Original strand, 48099378 - 48099468
Alignment:
Q  225 attctatcacacccc-gcagttgaagcgggaggtttacggacgcttagaatggtatgaaaatcatcaaaatgaactcaaagtaggcctttg 314  Q
    ||||||||||||||| ||||| ||||||||||||| ||| || |||||| ||||  |||||||||||||| |||| |   |||||||||||    
T  48099378 attctatcacacccccgcagtcgaagcgggaggttcacgaacacttagactggttcgaaaatcatcaaaaagaacacgcggtaggcctttg 48099468  T

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Target: scaffold0197 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 7304 - 7237
Alignment:
Q  166 gagagtaattacaaaataattaccaacataactactaacataattacataaagtcaaacattctatca 233  Q
    ||||||||||||||| |||| |||||||||| ||||||||||||||||||| ||||||||||||||||    
T  7304 gagagtaattacaaagtaataaccaacataattactaacataattacataaggtcaaacattctatca 7237  T

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Target: scaffold0197; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 7395 - 7339
Alignment:
Q  92 taaaggaattcaatccgtgaattttatttgtaatgatcaagagtatatatacagtta 148  Q
    |||||||| ||||| ||||||||| |||  ||||||||||||||||||||| |||||    
T  7395 taaaggaaatcaattcgtgaatttcattgataatgatcaagagtatatatatagtta 7339  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 15935270 - 15935331
Alignment:
Q  166 gagagtaattacaaaataattaccaacataactactaacataattacataaagtcaaacatt 227  Q
    |||||| ||||||||||||| |||||||||| || |||||||||||||||||||||||||||    
T  15935270 gagagtgattacaaaataataaccaacataattagtaacataattacataaagtcaaacatt 15935331  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 225 - 292
Target Start/End: Original strand, 40270352 - 40270420
Alignment:
Q  225 attctatcacacccc-gcagttgaagcgggaggtttacggacgcttagaatggtatgaaaatcatcaaa 292  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||||| ||| ||||  |||||||||||||    
T  40270352 attctatcacacccccgcagtcgaagcgggaggttcacggacgctaagactggtccgaaaatcatcaaa 40270420  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 292
Target Start/End: Complemental strand, 19183693 - 19183626
Alignment:
Q  226 ttctatcacacccc-gcagttgaagcgggaggtttacggacgcttagaatggtatgaaaatcatcaaa 292  Q
    |||||||||||||| ||||| ||||||||||||| ||  ||||||||| ||||  |||||||||||||    
T  19183693 ttctatcacacccccgcagtcgaagcgggaggttcacaaacgcttagactggtccgaaaatcatcaaa 19183626  T

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Target: scaffold0009 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 225 - 292
Target Start/End: Complemental strand, 32187 - 32119
Alignment:
Q  225 attctatcacacccc-gcagttgaagcgggaggtttacggacgcttagaatggtatgaaaatcatcaaa 292  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||||| ||| ||||  |||||||||||||    
T  32187 attctatcacacccccgcagtcgaagcgggaggttcacggacgctaagactggtccgaaaatcatcaaa 32119  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 314
Target Start/End: Original strand, 9932096 - 9932186
Alignment:
Q  225 attctatcacacccc-gcagttgaagcgggaggtttacggacgcttagaatggtatgaaaatcatcaaaatgaactcaaagtaggcctttg 314  Q
    ||||||||||||||| ||||| ||||||||||||| ||| || |||||| ||||  |||||||||||||| |||| |   |||||||||||    
T  9932096 attctatcacacccccgcagtcgaagcgggaggttcacgaacacttagactggttcgaaaatcatcaaaaagaacacgcggtaggcctttg 9932186  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 314
Target Start/End: Complemental strand, 44387668 - 44387578
Alignment:
Q  225 attctatcacacccc-gcagttgaagcgggaggtttacggacgcttagaatggtatgaaaatcatcaaaatgaactcaaagtaggcctttg 314  Q
    ||||||||||||||| ||||| ||||||||||||| || | |||||||| ||||  | |||||||||||| |||||| | ||||| |||||    
T  44387668 attctatcacacccccgcagtcgaagcgggaggttcacaggcgcttagactggttcggaaatcatcaaaaagaactcgaggtaggactttg 44387578  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 292
Target Start/End: Complemental strand, 24210301 - 24210233
Alignment:
Q  225 attctatcacac-cccgcagttgaagcgggaggtttacggacgcttagaatggtatgaaaatcatcaaa 292  Q
    ||||||||| || |||||||| ||||||||||||| ||||||||| ||| ||||  |||||||||||||    
T  24210301 attctatcagactcccgcagtcgaagcgggaggttcacggacgctaagactggtccgaaaatcatcaaa 24210233  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 292
Target Start/End: Complemental strand, 45030066 - 45030010
Alignment:
Q  236 ccccgcagttgaagcgggaggtttacggacgcttagaatggtatgaaaatcatcaaa 292  Q
    |||| |||| ||||||||||||| ||||||||| ||| ||||  |||||||||||||    
T  45030066 ccccacagtcgaagcgggaggttcacggacgctgagactggtccgaaaatcatcaaa 45030010  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 292
Target Start/End: Complemental strand, 45034917 - 45034861
Alignment:
Q  236 ccccgcagttgaagcgggaggtttacggacgcttagaatggtatgaaaatcatcaaa 292  Q
    |||| |||| ||||||||||||| ||||||||| ||| ||||  |||||||||||||    
T  45034917 ccccacagtcgaagcgggaggttcacggacgctgagactggtccgaaaatcatcaaa 45034861  T

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Target: scaffold0936 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0936
Description:

Target: scaffold0936; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 314
Target Start/End: Complemental strand, 3658 - 3569
Alignment:
Q  225 attctatcacaccccgcagttgaagcgggaggtttacggacgcttagaatggtatgaaaatcatcaaaatgaactcaaagtaggcctttg 314  Q
    |||||||||||||||| ||| |||| |||||||| ||| ||||||| | ||||   || |||||||||| |||||| | |||||||||||    
T  3658 attctatcacaccccggagtcgaagagggaggttcacgaacgcttatactggtccaaatatcatcaaaaagaactcgaggtaggcctttg 3569  T

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Target: scaffold0655 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 292
Target Start/End: Original strand, 5642 - 5698
Alignment:
Q  236 ccccgcagttgaagcgggaggtttacggacgcttagaatggtatgaaaatcatcaaa 292  Q
    ||||||||| ||||||||||||| ||||||||||||| ||||   ||||||||||||    
T  5642 ccccgcagtcgaagcgggaggttcacggacgcttagactggtccaaaaatcatcaaa 5698  T

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Target: scaffold0134 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 292
Target Start/End: Complemental strand, 41105 - 41037
Alignment:
Q  225 attctatcacacccc-gcagttgaagcgggaggtttacggacgcttagaatggtatgaaaatcatcaaa 292  Q
    ||||||||||||||| | ||| ||||||||||||| ||||||||||||| ||||  |||| ||||||||    
T  41105 attctatcacacccccgtagtcgaagcgggaggttcacggacgcttagactggtccgaaagtcatcaaa 41037  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 292
Target Start/End: Complemental strand, 16594954 - 16594886
Alignment:
Q  225 attctatcacaccc-cgcagttgaagcgggaggtttacggacgcttagaatggtatgaaaatcatcaaa 292  Q
    |||||||||||||| |||||| ||||||||||||| |||||| |||||| | ||  |||||||||||||    
T  16594954 attctatcacaccctcgcagtcgaagcgggaggttcacggacacttagactagtccgaaaatcatcaaa 16594886  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 292
Target Start/End: Complemental strand, 33166307 - 33166251
Alignment:
Q  236 ccccgcagttgaagcgggaggtttacggacgcttagaatggtatgaaaatcatcaaa 292  Q
    ||||||||| ||||||||||||| ||||||||| ||| ||||  |||||||||||||    
T  33166307 ccccgcagtcgaagcgggaggttcacggacgctgagactggtccgaaaatcatcaaa 33166251  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 21875304 - 21875350
Alignment:
Q  193 ataactactaacataattacataaagtcaaacattctatcacacccc 239  Q
    |||| ||| |||||||||||| ||||||||||||| |||||||||||    
T  21875304 ataattacgaacataattacagaaagtcaaacattttatcacacccc 21875350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 272
Target Start/End: Original strand, 1545864 - 1545912
Alignment:
Q  225 attctatcacaccc-cgcagttgaagcgggaggtttacggacgcttaga 272  Q
    |||||||||||||| |||||| ||||||||||||| |||||||||||||    
T  1545864 attctatcacaccctcgcagtcgaagcgggaggttcacggacgcttaga 1545912  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 40623381 - 40623336
Alignment:
Q  225 attctatcacaccccgcagttgaagcgggaggtttacggacgctta 270  Q
    |||||||||||||||| ||| |||| |||||||| |||||||||||    
T  40623381 attctatcacaccccggagtcgaagggggaggttcacggacgctta 40623336  T

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