View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17360_high_3 (Length: 482)
Name: NF17360_high_3
Description: NF17360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17360_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Original strand, 29511031 - 29511484
Alignment:
| Q |
1 |
ttgcctgcatgcatacatgcaaattatgtttggataaaatctaataaatgcagccatttagtttttaaaatttggctcggagctaattcaactctacaaa |
100 |
Q |
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| T |
29511031 |
ttgcctgcatgcatacatgcaaattatgtttggataaaatctaataaatgcagccatttagtttttaaaatttggctcggagctaattcaactctacaaa |
29511130 |
T |
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| Q |
101 |
actagcttgtaaagtcaagtatgtctgacacttataacattttcgaagccatatattatccaatataggactctccacacaccccgccacaacatggtcc |
200 |
Q |
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| T |
29511131 |
actagcttgtaaagtcaagtatgtctgacacttataacattttcgaagccatatattatccaatataggactctccacacaccccgccacaccatggtcc |
29511230 |
T |
|
| Q |
201 |
gcaatcgataaaacttccccgaaggaaaaggtttgatctctaatcatataaaaaatgttgtaaaagtactattatannnnnnnnnnnnnnnnnngggaga |
300 |
Q |
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| T |
29511231 |
gcaatcgataaaacttcaccgaaggaaaaggtttgatctctaatcatataaaaaatgttgtaaaagtactattatatttttttgtaatgtttttgggaga |
29511330 |
T |
|
| Q |
301 |
tttaacatgcatacccatctgattgtgactctctcatcaattttcttctttggttcaactggatgtcttcctgtcatcatttcaacaagcaatacaccaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29511331 |
tttaacatgcatacccatctgattgtgactctctcatcaattttcttctttggttcaactggatgtcttcctgtcatcatttcaacaagcaatacaccaa |
29511430 |
T |
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| Q |
401 |
atgaataaacgtcactcttttctgtgagttgataagttctcaagtactcaggat |
454 |
Q |
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| T |
29511431 |
atgaataaacatcactcttttctgtgagttgataagttctcaagtactcaggat |
29511484 |
T |
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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 346 - 431
Target Start/End: Original strand, 24915576 - 24915661
Alignment:
| Q |
346 |
ttctttggttcaactggatgtcttcctgtcatcatttcaacaagcaatacaccaaatgaataaacgtcactcttttctgtgagttg |
431 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||| | |||||| |
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| T |
24915576 |
ttctttggttcaactggatgtcttcctgtcatgatttcaacaagtaacacaccaaatgaataaacatcactcttttccgagagttg |
24915661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 381 - 446
Target Start/End: Original strand, 11193263 - 11193328
Alignment:
| Q |
381 |
ttcaacaagcaatacaccaaatgaataaacgtcactcttttctgtgagttgataagttctcaagta |
446 |
Q |
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| T |
11193263 |
ttcaacaagcaaaacaccgaacgaataaacgtcactcttttcggttagttgataagttttcaagta |
11193328 |
T |
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