View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17360_high_30 (Length: 308)
Name: NF17360_high_30
Description: NF17360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17360_high_30 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 31 - 283
Target Start/End: Original strand, 8284879 - 8285131
Alignment:
| Q |
31 |
cacataggtttaatcacttatctggtttcatgaactatggaagtgaaaatggaaactcctcaatggttcaacccttacctcaacagaatgttgatgtacc |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8284879 |
cacataggtttaatcacttatctggtttcatgaactatggaagtgaaaatggaaactcctcaatggttcaacccttacctcaacagaatgttgatgtacc |
8284978 |
T |
|
| Q |
131 |
tctagttaatcatgagatcaccatgaactatggaagtaaaagtggaattgcctcaatgaatcaccgatatgatcaagagaagattcaagaggaagcaatg |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8284979 |
tctagttaatcatgagatcaccatgaactatggaagtaaaagtggaattgcctcaatgaatcaccgatatgatcaagagaagattcaagaggaagcaatg |
8285078 |
T |
|
| Q |
231 |
aatatgattcacatgtaccagcaagacccacaacttaattttggtgttgctac |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8285079 |
aatatgattcacatgtaccagcaagacccacaacttaattttggtgttgctac |
8285131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 202 - 277
Target Start/End: Original strand, 34687150 - 34687225
Alignment:
| Q |
202 |
atcaagagaagattcaagaggaagcaatgaatatgattcacatgtaccagcaagacccacaacttaattttggtgt |
277 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||| |||||| |||| |||||||||||| ||||||||||||| |
|
|
| T |
34687150 |
atcaagagaatattcaagaggaagcgatgaatatgatgcacatgcaccaacaagacccacaatttaattttggtgt |
34687225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 105 - 277
Target Start/End: Original strand, 34694979 - 34695151
Alignment:
| Q |
105 |
ttacctcaacagaatgttgatgtacctctagttaatcatgagatcaccatgaactatggaagtaaaagtggaattgcctcaatgaatcaccgatatgatc |
204 |
Q |
| |
|
||||||||| | ||||||||| | |||||| ||||| |||| | || |||||||||||||| |||| |||||| |||||| ||| ||| | ||||| |
|
|
| T |
34694979 |
ttacctcaagaaaatgttgatctgcctctacttaattatgataacatcatgaactatggaaacaaaaatggaatctgctcaatcaatgacctttttgatc |
34695078 |
T |
|
| Q |
205 |
aagagaagattcaagaggaagcaatgaatatgattcacatgtaccagcaagacccacaacttaattttggtgt |
277 |
Q |
| |
|
||||||| ||||||||||| | || ||||||| || ||| | || |||||||||||||||||||||||||| |
|
|
| T |
34695079 |
aagagaatattcaagaggagtcgattcatatgatgcatatgcatcaacaagacccacaacttaattttggtgt |
34695151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University