View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17360_high_31 (Length: 303)
Name: NF17360_high_31
Description: NF17360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17360_high_31 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 9 - 303
Target Start/End: Complemental strand, 40724133 - 40723839
Alignment:
| Q |
9 |
cagaaaagaatgcaccatccatcatctttattgatgaaattgattctattgcacccaagcgggacaagacaaatggtgaagtagaaagaaggattgtttc |
108 |
Q |
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| T |
40724133 |
cagaaaagaatgcaccatccatcatctttattgatgaaattgattctattgcacccaagcgggacaagacaaatggtgaagtagaaagaaggattgtttc |
40724034 |
T |
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| Q |
109 |
acaacttctgactcttatggatgggctaaaatcccgtgctcatgttattgtcatgggggccactaatcgccccaatagcattgacccggcattgagaagg |
208 |
Q |
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| T |
40724033 |
acaacttctgactcttatggatgggctaaaatcccgtgctcatgttattgtcatgggggccactaatcgccccaatagcattgacccggcattgagaagg |
40723934 |
T |
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| Q |
209 |
tttggtagatttgatagggaaatcgatattggtgttccagatgaaattgggcgacttgaagtccttcgcatacataccaaaaacatgaagctctc |
303 |
Q |
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| T |
40723933 |
tttggtagatttgatagggaaatcgatattggtgttccagatgaaattgggcgacttgaagtccttcgcatacataccaaaaacatgaagctctc |
40723839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 197 - 303
Target Start/End: Original strand, 40666102 - 40666208
Alignment:
| Q |
197 |
gcattgagaaggtttggtagatttgatagggaaatcgatattggtgttccagatgaaattgggcgacttgaagtccttcgcatacataccaaaaacatga |
296 |
Q |
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| T |
40666102 |
gcattgagaaggtttggtagatttgatagggaaatcgatattggtgttccagatgaaattgggcgacttgaagtccttcgcatacataccaaaaacatga |
40666201 |
T |
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| Q |
297 |
agctctc |
303 |
Q |
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||||||| |
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| T |
40666202 |
agctctc |
40666208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 9 - 141
Target Start/End: Original strand, 40665933 - 40666066
Alignment:
| Q |
9 |
cagaaaagaatgcaccatccatcatctttatt-gatgaaattgattctattgcacccaagcgggacaagacaaatggtgaagtagaaagaaggattgttt |
107 |
Q |
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| T |
40665933 |
cagaaaagaatgcaccatccatcatctttatttgatgaaattgattctattgcacccaagcgggagaagacaaacggtgaagttgaaagaaggattgtct |
40666032 |
T |
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| Q |
108 |
cacaacttctgactcttatggatgggctaaaatc |
141 |
Q |
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| T |
40666033 |
cacaacttctgactcttatggatgggctagaatc |
40666066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 14 - 285
Target Start/End: Complemental strand, 41092955 - 41092684
Alignment:
| Q |
14 |
aagaatgcaccatccatcatctttattgatgaaattgattctattgcacccaagcgggacaagacaaatggtgaagtagaaagaaggattgtttcacaac |
113 |
Q |
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| T |
41092955 |
aagaatgcaccttccatcatctttattgatgagatagattccatagctcctaagcgagagaaaactcacggtgaagtagagaggaggattgtctcccaac |
41092856 |
T |
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| Q |
114 |
ttctgactcttatggatgggctaaaatcccgtgctcatgttattgtcatgggggccactaatcgccccaatagcattgacccggcattgagaaggtttgg |
213 |
Q |
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| T |
41092855 |
tcttgacccttatggatggtcttaaatcacgtgcacatgtaattgttatgggagccacaaataggcccaatagcattgaccctgcacttaggaggtttgg |
41092756 |
T |
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| Q |
214 |
tagatttgatagggaaatcgatattggtgttccagatgaaattgggcgacttgaagtccttcgcatacatac |
285 |
Q |
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| T |
41092755 |
aaggtttgatagggagattgatattggtgttccagacgaggttgggcgtcttgaggttcttcgaattcatac |
41092684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 14 - 300
Target Start/End: Original strand, 27977349 - 27977635
Alignment:
| Q |
14 |
aagaatgcaccatccatcatctttattgatgaaattgattctattgcacccaagcgggacaagacaaatggtgaagtagaaagaaggattgtttcacaac |
113 |
Q |
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||||||||||| || |||||||| |||||||| || || || ||||| || ||| |||| ||||| ||||||||||| || |||| |||||||| || | |
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| T |
27977349 |
aagaatgcaccctcaatcatcttcattgatgagatagactccattgctccaaagagggagaagactaatggtgaagttgagcgaagaattgtttcccagc |
27977448 |
T |
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| Q |
114 |
ttctgactcttatggatgggctaaaatcccgtgctcatgttattgtcatgggggccactaatcgccccaatagcattgacccggcattgagaaggtttgg |
213 |
Q |
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| T |
27977449 |
tcttgaccctcatggatgggcttaaatcccgtgcacatgtaattgttatgggagcaacaaatcgtcccaatagcatcgaccctgctcttcggaggtttgg |
27977548 |
T |
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| Q |
214 |
tagatttgatagggaaatcgatattggtgttccagatgaaattgggcgacttgaagtccttcgcatacataccaaaaacatgaagct |
300 |
Q |
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| T |
27977549 |
aaggtttgatcgggagattgatattggtgtaccagatgaagttggacgtcttgaggttctccgcatccatacaaaaaatatgaagct |
27977635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 130
Target Start/End: Original strand, 15690253 - 15690360
Alignment:
| Q |
21 |
caccatccatcatctttattgatgaaattgattctattgcacccaagcgggacaagacaaatggtgaagtagaaagaaggattgtttcacaacttctgac |
120 |
Q |
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|||||| |||| |||||||||||||| ||||||||| || |||||| | || |||||| || |||||| || |||||||||||||||||| | ||| |
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| T |
15690253 |
caccattcatcttctttattgatgaatttgattctactgtacccaa--gagagaagacacgtgatgaagttgatagaaggattgtttcacaagtcttgaa |
15690350 |
T |
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| Q |
121 |
tcttatggat |
130 |
Q |
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| T |
15690351 |
tcttatggat |
15690360 |
T |
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