View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17360_high_6 (Length: 424)
Name: NF17360_high_6
Description: NF17360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17360_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 26 - 290
Target Start/End: Complemental strand, 31658847 - 31658583
Alignment:
| Q |
26 |
catcaccattgccatttcttgcatctacaatagaggatcctaaggaagagattcatgatgattattcttctcaaaatcaattgttctcatcagataacct |
125 |
Q |
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| T |
31658847 |
catcaccattgccatttcttgcatctacaaaagaggatcctaaggaagagattcatgatgattattcttctcaaaatcaattgttctcatcagataacct |
31658748 |
T |
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| Q |
126 |
catatcatgtaactttgaattttgttttgattatttgagacatgccactatgctatcatcgattgaatcatttgaatttgagaatgtttatgaccagtta |
225 |
Q |
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| T |
31658747 |
catatcatgtaactttgaagtttattttgattatttgagacgtgccactatgctatcatcgattgaatcatttgaatttgagaatgtttatgaccagtta |
31658648 |
T |
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| Q |
226 |
ggattttgatggctatggatatgtttctgtctaagtgtaaatttattttcaaagtttggcattgg |
290 |
Q |
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| T |
31658647 |
ggattttgatggctatggatatgtttctgtctaagtgtaaatttattttcaaagtttggcattgg |
31658583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 210
Target Start/End: Original strand, 31650366 - 31650553
Alignment:
| Q |
23 |
catcatcaccattgccatttcttgcatctacaatagaggatcctaaggaagagattcatgatgattattcttctcaaaatcaattgttctcatcagataa |
122 |
Q |
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| T |
31650366 |
catcaccaccattgccacttcttgcatctacaaaaggagatcccaaggaagagatacatcatgatcattttcctcaaaaccaattgttctcaccggagaa |
31650465 |
T |
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| Q |
123 |
cctcatatcatgtaactttgaattttgttttgattatttgagacatgccactatgctatcatcgattgaatcatttgaatttgagaat |
210 |
Q |
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| T |
31650466 |
tctccaattatgcgattttgatgtttattttgattatttgagacatgtcagtgagtcatcatcgagtgaatctttttaatttgagaat |
31650553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 31657390 - 31657434
Alignment:
| Q |
33 |
attgccatttcttgcatctacaatagaggatcctaaggaagagat |
77 |
Q |
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| T |
31657390 |
attgccacttcttgcatctacaaaagaggaacccaaggaagagat |
31657434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 421
Target Start/End: Complemental strand, 31658558 - 31658530
Alignment:
| Q |
393 |
taatgggagatttatttgatcgtttaact |
421 |
Q |
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| T |
31658558 |
taatgggagatttatttgatcgtttaact |
31658530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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