View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17360_high_9 (Length: 372)

Name: NF17360_high_9
Description: NF17360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17360_high_9
NF17360_high_9
[»] chr6 (3 HSPs)
chr6 (21-366)||(17075410-17075755)
chr6 (148-366)||(11053484-11053702)
chr6 (22-152)||(11064036-11064166)
[»] chr8 (3 HSPs)
chr8 (22-283)||(17683905-17684166)
chr8 (37-200)||(36159902-36160065)
chr8 (315-366)||(17684198-17684249)
[»] chr4 (2 HSPs)
chr4 (24-287)||(10559739-10560002)
chr4 (310-366)||(10558434-10558490)
[»] chr1 (1 HSPs)
chr1 (22-365)||(26741535-26741878)


Alignment Details
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 21 - 366
Target Start/End: Complemental strand, 17075755 - 17075410
Alignment:
Q  21 gacatcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctc 120  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||| ||| ||| |    
T  17075755 gacatcatcaaacacaaccttctcatttccatgcactgccacccaattaacccaatcattgttaacggaccccgatgacgaactaccatccgaagctccc 17075656  T
Q  121 gaagaaaccgccctaaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgccgg 220  Q
    ||||||||| |  | |||||||||||||| || ||||| ||||||||||||||| ||||||||||||| ||||| ||||| | ||  || |||||||  |    
T  17075655 gaagaaaccacttttaccgcctttttaaggcgttccgagccttgtaattttctcaatttagattttaagatgtgtaaaactgaggaacgatctttgctag 17075556  T
Q  221 gcaaccgcgccaccttcttcaaactaaataccgaatgccgcaaaattccattcactttcttcctctttataactattgaactggatttagcaaaaggccg 320  Q
    ||| |||||||||||| |||| |||||  ||||| || ||||||||||| ||||||||||||| |||  |||| || | ||||||||  ||||  |||||    
T  17075555 gcagccgcgccacctttttcagactaatcaccgagtgtcgcaaaattccgttcactttcttccgcttgttaacgatggtactggattgtgcaatgggccg 17075456  T
Q  321 caccactttcttaaccttctttcttgtcgaagaaataacaccagcg 366  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||    
T  17075455 caccactttcttaaccttcttccttgccgaagaaataacaccagcg 17075410  T

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Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 148 - 366
Target Start/End: Complemental strand, 11053702 - 11053484
Alignment:
Q  148 agacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgccgggcaaccgcgccaccttcttcaaactaa 247  Q
    ||||| || |||||||||||||| ||||||||||||||||| || || |||| || || ||| |||||||  ||||||||||||||||| ||||||||||    
T  11053702 agacggtctgaaccttgtaatttcctcgatttagattttaagatatgtaaaatggtggaccgatctttgctaggcaaccgcgccacctttttcaaactaa 11053603  T
Q  248 ataccgaatgccgcaaaattccattcactttcttcctctttataactattga-actggatttagcaaaaggccgcaccactttcttaaccttctttcttg 346  Q
      ||||| ||||||| ||  ||||||||||||||||  ||  |  | |  || || |||||  |||| ||||||||||||||||||||||||||||||||    
T  11053602 tcaccgagtgccgcagaaccccattcactttcttccgattgtttgc-acagataccggattgggcaataggccgcaccactttcttaaccttctttcttg 11053504  T
Q  347 tcgaagaaataacaccagcg 366  Q
     ||| |||||||||||||||    
T  11053503 ccgatgaaataacaccagcg 11053484  T

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Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 22 - 152
Target Start/End: Complemental strand, 11064166 - 11064036
Alignment:
Q  22 acatcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcg 121  Q
    |||||||||| ||| || ||||||||| ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| || || ||||||  ||    
T  11064166 acatcatcaaccactactttctcattctcatgcactgccacccaattgacccaatcattattaaccgatcccgacgaggaactaccttccgaaacttccg 11064067  T
Q  122 aagaaaccgccctaaccgcctttttaagacg 152  Q
    | |||||| || ||||| |||||||||||||    
T  11064066 aggaaaccaccttaaccacctttttaagacg 11064036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 22 - 283
Target Start/End: Original strand, 17683905 - 17684166
Alignment:
Q  22 acatcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcg 121  Q
    |||||||||| | | || ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| || || ||||||| ||    
T  17683905 acatcatcaaccgctactttctcattcccatgcactgccacccaattaacccaatcattattaaccgacctcgacgaggaactaccttccgaaactcccg 17684004  T
Q  122 aagaaaccgccctaaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgccggg 221  Q
    | |||||| || | ||| ||||||||||||| || |||||||||||||| ||||||||||||||||| || || ||||||| || ||| |||||||  ||    
T  17684005 aggaaaccacctttaccacctttttaagacggtctgaaccttgtaatttcctcgatttagattttaagatatgtaaaacggtggaccgatctttgctagg 17684104  T
Q  222 caaccgcgccaccttcttcaaactaaataccgaatgccgcaaaattccattcactttcttcc 283  Q
    |||| |||||||||| ||||||||||  ||||| ||||||||||  ||||||||||||||||    
T  17684105 caactgcgccacctttttcaaactaatcaccgagtgccgcaaaaccccattcactttcttcc 17684166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 37 - 200
Target Start/End: Original strand, 36159902 - 36160065
Alignment:
Q  37 accttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaagaaaccgccctaa 136  Q
    ||||||||||||||||||||  ||||  ||||||||||||| |||||||| || |  || || |||||   ||||||| ||| ||||||  || || | |    
T  36159902 accttctcattcccatgcacaaccacaaaattaacccaatcgttgttaactgaacatgaagaagaacttttatctgaagctcccgaagaccccaccttca 36160001  T
Q  137 ccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaac 200  Q
    |||||||||| ||||||||||| || ||||||||||| | ||||||||||| ||||||||||||    
T  36160002 ccgcctttttcagacgatccgacccatgtaattttctagctttagattttagaatgtgcaaaac 36160065  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 315 - 366
Target Start/End: Original strand, 17684198 - 17684249
Alignment:
Q  315 aggccgcaccactttcttaaccttctttcttgtcgaagaaataacaccagcg 366  Q
    |||||||||||||||| | ||||||||||||| ||| |||||||||||||||    
T  17684198 aggccgcaccactttcctgaccttctttcttgccgatgaaataacaccagcg 17684249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 24 - 287
Target Start/End: Complemental strand, 10560002 - 10559739
Alignment:
Q  24 atcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaa 123  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||| || ||||| ||||||||| ||| ||||    
T  10560002 atcatcaactacaaccttctcattcccatgcactgccacccaattaacccaatcattgttatctgaacccgaggaagaactaccatctgaagctcccgaa 10559903  T
Q  124 gaaaccgccctaaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgccgggca 223  Q
    |||||| || | ||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| ||||||| ||   | |||||||  ||||    
T  10559902 gaaaccacctttaccgcctttttgagacgatctgatccttgtaattttctcgatttagattttaagatgtgtaaaacggtggattgatctttgctaggca 10559803  T
Q  224 accgcgccaccttcttcaaactaaataccgaatgccgcaaaattccattcactttcttcctctt 287  Q
     | || ||||||| ||||||||||  ||||| ||||||| ||  ||||||||||||||||||||    
T  10559802 gctgccccacctttttcaaactaatcaccgagtgccgcagaaacccattcactttcttcctctt 10559739  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 310 - 366
Target Start/End: Complemental strand, 10558490 - 10558434
Alignment:
Q  310 gcaaaaggccgcaccactttcttaaccttctttcttgtcgaagaaataacaccagcg 366  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10558490 gcaataggccgcaccactttcttaaccttctttcttgccgaagaaataacaccagcg 10558434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 22 - 365
Target Start/End: Original strand, 26741535 - 26741878
Alignment:
Q  22 acatcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcg 121  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||| || ||||| || ||||| ||||| ||| ||| ||    
T  26741535 acatcatcaaccacaaccttctcattcccatgcacttccacccaattaacccaatcgttgttaactgaacccgaggaagaactaccatccgaagctcccg 26741634  T
Q  122 aagaaaccgccctaaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgccggg 221  Q
    |||||||| |||| || ||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||| | ||  || ||||||| |||    
T  26741635 aagaaaccacccttacagccttcttaagacgatccgatccttgtaattttctcgacttagattttaagatgtgtaaaactgtggaacgatctttgcaggg 26741734  T
Q  222 caaccgcgccaccttcttcaaactaaataccgaatgccgcaaaattccattcactttcttcctctttataactattgaactggatttagcaaaaggccgc 321  Q
    || |||  ||||||| ||||||||||  ||||  | ||| || ||  ||||||||||||||| |||  |||| |  | ||  |||| ||||| |||| ||    
T  26741735 cagccgatccacctttttcaaactaatcaccgggttccgtaagatctcattcactttcttccgcttgttaacaaaggtacatgattgagcaataggctgc 26741834  T
Q  322 accactttcttaaccttctttcttgtcgaagaaataacaccagc 365  Q
     ||||| ||||||||||||| || | ||| ||||||||||||||    
T  26741835 gccactctcttaaccttcttcctagccgatgaaataacaccagc 26741878  T

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