View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17361_low_1 (Length: 677)
Name: NF17361_low_1
Description: NF17361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17361_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 20 - 460
Target Start/End: Original strand, 7077385 - 7077825
Alignment:
| Q |
20 |
gcctcaacaattttatttcagatgaagttgtactttcatgtatcagtgagggtggttttgtcactcacatagcaccaaattatttcttcgtttggagatt |
119 |
Q |
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| T |
7077385 |
gcctcaacaattttatttcagatgaagttgtactttcatgtaccagtgagggtggttttgtcactcacatagcaccaaattatttcttcgtttggagatt |
7077484 |
T |
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| Q |
120 |
tcctataggcaaaactgaacattgtcgtgcagaatggaaaggtttacatgcttcattcattgcatatgatccccaatatgatggtaaaggtgctgatctc |
219 |
Q |
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| T |
7077485 |
tcctataggcaaaactgaacattgtcgtgcagaatggaaaggtttacatgcttcattcattgcatatgatccccaatatgatggtaaaggtgctgatctc |
7077584 |
T |
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| Q |
220 |
ttttggatagcaaagaaagaagggttatttcatagttttgatgataggtcctatgacaaaaatgttagttgggttaagagttaatattccttctaatatt |
319 |
Q |
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| T |
7077585 |
ttttggatagcaaagaaagaagggttatttcatagttttgatgataggtcctatgacaaaaatgttagttgggttaagagttgatattccttctaatatt |
7077684 |
T |
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| Q |
320 |
tctttaataaatactcatctcattgttgtacaatataacatgaagattatgtgtacaatagttggtgaaatatcgggtttgtgtactgttctgtcatttt |
419 |
Q |
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| T |
7077685 |
tctttaataaatactcctctcattgttgtacaatataacatgaagattatgtgtacaatagttggtgaaatatcgggtttgtgtactgttctgtcatttt |
7077784 |
T |
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| Q |
420 |
gaacttgactatggttatgatgatttggtgtaaaacaaaac |
460 |
Q |
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| T |
7077785 |
gaacttgactatggttatgatgatttggtgtaaaacaaaac |
7077825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 508 - 666
Target Start/End: Complemental strand, 8814658 - 8814500
Alignment:
| Q |
508 |
ttgtgcaggttcaaagttagatgctagtccaaggcttgattctaatactttcactttgtgttggtgttgtatcttcttagctttcagtggtgttctgttt |
607 |
Q |
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| T |
8814658 |
ttgtgcaggttcaaagttagatgctagtccaaggcttgattctaagactttcactttgtgttggtgttgtatcttcttagcttctagtggtgttctggtt |
8814559 |
T |
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| Q |
608 |
tgttgttctttatttcaattttctgtttaggatgtggtactgtgctgggtctgtgctgc |
666 |
Q |
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| T |
8814558 |
tgttgttctttaattcaattttctgtttaggatgtggtactgtgctgggtctttgctgc |
8814500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 9e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 494 - 650
Target Start/End: Original strand, 21964446 - 21964598
Alignment:
| Q |
494 |
gaatccaaccttgattgtgcaggttcaaagttagatgctagtccaaggcttgattctaatactttcactttgtgttggtgttgtatcttcttagctttca |
593 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||| || |
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| T |
21964446 |
gaatccaagcttgattgtgcaggttcagagttagatgctagtccatggcttgattctaagactttcactttgtgttggtgttgtatctccttagcttcca |
21964545 |
T |
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| Q |
594 |
gtggtgttctgttttgttgttcttta-tttcaattttctgtttaggatgtggtactgt |
650 |
Q |
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| | ||||||||||||||||| ||| | |||||||||||| |||||||||||| |
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| T |
21964546 |
atcg-----tgttttgttgttctttattttgagttttctgtttagcatgtggtactgt |
21964598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 524 - 631
Target Start/End: Original strand, 23379793 - 23379904
Alignment:
| Q |
524 |
ttagatgctagtccaaggcttgattctaatactttcactttgtgtt-ggtgttgtatcttcttagctttc----agtggtgttctgttttgttgttcttt |
618 |
Q |
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| T |
23379793 |
ttagatgctagtccatggcttgatgctaagaatgtc-ctttgtgtttggtgttgtctctccttagcttccttccaatggtgttttgttttgttgttcttt |
23379891 |
T |
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| Q |
619 |
atttcaattttct |
631 |
Q |
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|||| ||||||| |
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| T |
23379892 |
atttagattttct |
23379904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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