View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17361_low_3 (Length: 284)
Name: NF17361_low_3
Description: NF17361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17361_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 8 - 268
Target Start/End: Original strand, 50749210 - 50749470
Alignment:
| Q |
8 |
gggtagattattcttgatcaaagtgacattaatagtcttttttcaatggactccttcattatagattagaaggacaaactcttaccacttaattgacaca |
107 |
Q |
| |
|
||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50749210 |
gggtaaattattattgatcaaagtgacattaatggtcttttttcaatggactccttcattatagattagaaggacaaactcttaccacttaattgacaca |
50749309 |
T |
|
| Q |
108 |
ttattgatataataattcgttcaattgcaggtgtctataattgaaaatgtatactggaaggagtttgggctactagcatttgtgtggatttcattccttg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50749310 |
ttattgatataataattcgttcaattgcaggtgtctataattgaaaatgtatactggaaggagtttgggctactagcatttgtgtggatttcattccttg |
50749409 |
T |
|
| Q |
208 |
cactacagattgccaaggtatgttctgtcatcacagttattaatacataataccagtttat |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50749410 |
cactacagattgccaaggtatgttctgtcatcacagttattaatacataataccagtttat |
50749470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 256
Target Start/End: Original strand, 50876057 - 50876183
Alignment:
| Q |
132 |
ttgcaggtgtctataattgaaaatgtatactggaaggagtttgggctactagcatttgtgtggatttcattccttgcactacagattgccaaggtatgtt |
231 |
Q |
| |
|
|||||||| |||||||||||||||| | | ||||||||||||| || ||||||||||| ||| ||||| || ||||| ||||||||||||||| || | |
|
|
| T |
50876057 |
ttgcaggtcactataattgaaaatgtgtgccggaaggagtttggacttctagcatttgtttgggtttcactcattgcagcacagattgccaaggtttgct |
50876156 |
T |
|
| Q |
232 |
ctgtcatcacagtt--attaatacata |
256 |
Q |
| |
|
|| |||||||||| ||||||||||| |
|
|
| T |
50876157 |
cttccatcacagttaaattaatacata |
50876183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 50813440 - 50813385
Alignment:
| Q |
194 |
gatttcattccttgcactacagattgccaaggtatgttctgtcatcacagttatta |
249 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||| ||||||||||||||| |
|
|
| T |
50813440 |
gatttcattccttgcactacagattgtcaaggtttgttctatcatcacagttatta |
50813385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 194 - 249
Target Start/End: Original strand, 50862424 - 50862479
Alignment:
| Q |
194 |
gatttcattccttgcactacagattgccaaggtatgttctgtcatcacagttatta |
249 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||| ||||||||||||||| |
|
|
| T |
50862424 |
gatttcattccttgcactacagattgtcaaggtttgttctatcatcacagttatta |
50862479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University