View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17361_low_4 (Length: 266)
Name: NF17361_low_4
Description: NF17361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17361_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 41 - 250
Target Start/End: Complemental strand, 11901777 - 11901568
Alignment:
| Q |
41 |
aaggtaagccaagtcaaagatatagacaaaaagttgcttgattgtcttgagccacatccgaatttgagagcgctattcattgtggggtacaatggtcaca |
140 |
Q |
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| T |
11901777 |
aaggtaagccatgtcaaagatatagaccgaaagttgcttgattgtcttgagccacatccgaatttgagagcgctattcattgtggggtacaatcgtcaca |
11901678 |
T |
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| Q |
141 |
ccttgtctaactggctccattccatccaatgtcttgttaagtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccaca |
240 |
Q |
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| T |
11901677 |
ccttgtctaactggctccattccatccagtgtcttgttaagtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccaca |
11901578 |
T |
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| Q |
241 |
tctcaaggtt |
250 |
Q |
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|||||||||| |
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| T |
11901577 |
tctcaaggtt |
11901568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 71 - 250
Target Start/End: Original strand, 12039554 - 12039733
Alignment:
| Q |
71 |
aagttgcttgattgtcttgagccacatccgaatttgagagcgctattcattgtggggtacaatggtcacaccttgtctaactggctccattccatccaat |
170 |
Q |
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| T |
12039554 |
aagtcgcttgactgtattgtgccaccttcgaatctgagagtgttattcattgtggggtacaatggtcacaccttgtctgactggttcggttcacttcatt |
12039653 |
T |
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| Q |
171 |
gtcttgttaagtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccacatctcaaggtt |
250 |
Q |
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| T |
12039654 |
gtcttgttaagtttaccttgaatgactgcccaaaatgcgaatttctcccgccaatggatgagcttccacatctcaaggtt |
12039733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 76 - 250
Target Start/End: Original strand, 11828659 - 11828833
Alignment:
| Q |
76 |
gcttgattgtcttgagccacatccgaatttgagagcgctattcattgtggggtacaatggtcacaccttgtctaactggctccattccatccaatgtctt |
175 |
Q |
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|||||||||||| |||||||||| ||| || || |||||| |||| |||||||| |||||||| ||||||||||||||| ||| | ||||| ||| |
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| T |
11828659 |
gcttgattgtctccagccacatccaaatctgcaagtgctattagttgtcgggtacaacggtcacacattgtctaactggctcgcttcacttcaatgcctt |
11828758 |
T |
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| Q |
176 |
gttaagtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccacatctcaaggtt |
250 |
Q |
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| T |
11828759 |
gttaagtttaccttgaatgactgtcccaaatgcgaatttctcccaccaatggatgagcttccacatctcaaggtt |
11828833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 80 - 250
Target Start/End: Original strand, 11860795 - 11860965
Alignment:
| Q |
80 |
gattgtcttgagccacatccgaatttgagagcgctattcattgtggggtacaatggtcacaccttgtctaactggctccattccatccaatgtcttgtta |
179 |
Q |
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| T |
11860795 |
gattgtctcgagccacatcagaatctgaaagagctattagttgtcgggtaccatggccacatgttgtctaattggctcgcttcacttcaattccttggta |
11860894 |
T |
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| Q |
180 |
agtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccacatctcaaggtt |
250 |
Q |
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| T |
11860895 |
aatttaccttgaacgactgtcccaattgcaaatttctcccaccaatggatcagcttccacatctcaaggtt |
11860965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 248
Target Start/End: Original strand, 11732458 - 11732635
Alignment:
| Q |
71 |
aagttgcttgattgtcttgagccacatccgaatttgagagcgctattcattgtggggtacaatggtcacaccttgtctaactggctccattccatccaat |
170 |
Q |
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| T |
11732458 |
aagttacttgaatgtctccaaccacctcccaatttgaaagttctattcattgtagggtacaatggccgcaccttatctaaatggctcgattcgcttcaat |
11732557 |
T |
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| Q |
171 |
gtcttgttaagtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccacatctcaagg |
248 |
Q |
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| T |
11732558 |
gccttgttaagtttaccttgagtgactgtcctaaatgcaaatttctaccgccaatcgatcaccttccaaatctcaagg |
11732635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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