View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17362_high_5 (Length: 242)
Name: NF17362_high_5
Description: NF17362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17362_high_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 34615634 - 34615875
Alignment:
| Q |
1 |
ttctacaatgtgtgacacgcatccttaatgtgagagtaaggtttccttaactgtgaagcaggttttaagaatgtacaatatgcgtatcttatcagttatg |
100 |
Q |
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| T |
34615634 |
ttctacaatgtgtgacacgcatccttaatgtgaaagtaaggtttccttaactgtgaagcaggttttaagaatgtacaatatgcgtatcttatcagttatg |
34615733 |
T |
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| Q |
101 |
gcaataattaccagcacatgccatgtatttgttactgtagattaaaaacataatgcttggtgtggacgacactgtcacatacatcacctcgtgctaaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||| ||||| |
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| T |
34615734 |
gcaataattaccagcacatgccatgtatttgttactgtagattaaaaacataatgcttggtgtgcacgacactttcacatgcatcacctcgtgccaaaaa |
34615833 |
T |
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| Q |
201 |
attaagtggcaaaataaagagtgatatgaagatacgttacgt |
242 |
Q |
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| T |
34615834 |
ataaagtggcaaaataaagagtgatatgaagatacgttacgt |
34615875 |
T |
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