View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17362_low_10 (Length: 216)
Name: NF17362_low_10
Description: NF17362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17362_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 31504700 - 31504504
Alignment:
| Q |
17 |
acatcccctagcctgtatcgaaaaagacatgatcatcagtggatgaaaaagatgaaccgcgactttcccacatgaaatatttttgcgt--ttcatagaaa |
114 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||| |
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| T |
31504700 |
acatcccctagcctgtatagaaaaagacatgatcatcagtggatgaaaaagatgaaccacgactttcccacatgaaatatttttacgtgtttcatagaaa |
31504601 |
T |
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| Q |
115 |
taaacctgcaaataagtcatatatggacttggattcacaactctcaatgctctataaacttcaaatggatcagcgaaggttctcctttcatatctct |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31504600 |
taaacctgcaaataagtcatatatggacttggattcacaactctcaatgctctataaacttcaaatggatcagcgaaggttctcctttcaaatctct |
31504504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 27609566 - 27609759
Alignment:
| Q |
17 |
acatcccctagcctgtatcgaaaaagacatgatcatcagtggatgaaaaagatgaaccgcgactttcccacatgaaatatttttgcgtttcatagaaata |
116 |
Q |
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|||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| |||||| || |||||||||||||| ||| |||||||||| |
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| T |
27609566 |
acatcccctagcctgtatagaaaa-gacatgatcatcagcggatgaaaaagatgaaccgttactttctcaaatgaaatatttttgtgttgcatagaaata |
27609664 |
T |
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| Q |
117 |
aacctgcaaataagtcatatatggacttggattcacaactctcaatgctctataaacttcaaatggatcagcgaaggttctcctttcatatctct |
211 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27609665 |
aacctgaaaataagtcatatatggacttggattcacaactctcaatgctctataaacttcaaatggatcagcgaaggttctcctttcaaatctct |
27609759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 34498036 - 34498229
Alignment:
| Q |
17 |
acatcccctagcctgtatcgaaaaagacatgatcatcagtggatgaaaaagatgaaccgcgactttcccacatgaaatatttttgcgtttcatagaaata |
116 |
Q |
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|||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| |||||| || |||||||||||||| ||| |||||||||| |
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| T |
34498036 |
acatcccctagcctgtatagaaaa-gacatgatcatcagcggatgaaaaagatgaaccgtaactttctcaaatgaaatatttttgtgttgcatagaaata |
34498134 |
T |
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| Q |
117 |
aacctgcaaataagtcatatatggacttggattcacaactctcaatgctctataaacttcaaatggatcagcgaaggttctcctttcatatctct |
211 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34498135 |
aacctgaaaataagtcatatatggacttggattcacaactctcaatgctctataaacttcaaatggatcagcgaaggttctcctttcaaatctct |
34498229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 51687017 - 51687080
Alignment:
| Q |
116 |
aaacctgcaaataagtcatatatggacttggattcacaactctcaatgctctataaacttcaaa |
179 |
Q |
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|||||||||||||||||||||||||||| ||||| |||| ||||| ||||| || |||||||| |
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| T |
51687017 |
aaacctgcaaataagtcatatatggactaggattaacaattctcagagctctgtagacttcaaa |
51687080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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