View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17362_low_3 (Length: 413)
Name: NF17362_low_3
Description: NF17362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17362_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 13 - 399
Target Start/End: Complemental strand, 7866105 - 7865719
Alignment:
| Q |
13 |
aatatcacgagttttcattcgatgtcagcgtaaaactattagtgcatctccattatgttcattcttaattaannnnnnnnggttataggcttcttataga |
112 |
Q |
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| T |
7866105 |
aatatcacgagttttcattcgatgtcagtgtaaaactattagtgcatctccattatgttcattcttaattaatattttttggttataggcttcttataga |
7866006 |
T |
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| Q |
113 |
aaagctggtagcattgcagagcaggccataagttcaattaggacagtgttttcttttgtagctgaaagtcaattgggtgaaaaatattcagagctacttc |
212 |
Q |
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| T |
7866005 |
aaagctggtagcattgcagagcaggccataagttcaattaggacagtgttttcttttgtagctgaaagtcaattgggtgaaaaatattcagagctacttc |
7865906 |
T |
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| Q |
213 |
aaaaatcagctccaattggagctaaaattggttttgcaaaaggtgcaggaatgggtgttatctacttagtaacatattcaacatgggctttggctttttg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7865905 |
aaaaatcagctccaattggagctaaaattggttttgcaaaaggtgcaggaatgggtgttatctacttagtaacatattcaacatgggctttggctttttg |
7865806 |
T |
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| Q |
313 |
gtatggctctatcttaattgctaggggtgaacttgatggtggttcagctattgcttgtttctttggtgtcaatgttgggggaaggtg |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7865805 |
gtatggctctatcttaattgctaggggtgaacttgatggtggttcagctattgcttgtttcttcggtgtcaatgttgggggaaggtg |
7865719 |
T |
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