View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17362_low_7 (Length: 359)
Name: NF17362_low_7
Description: NF17362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17362_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 20 - 341
Target Start/End: Complemental strand, 29518564 - 29518244
Alignment:
| Q |
20 |
tgtttatcgccatgtctaattagaggaagcgtggatgggtacttaggccccaaggatataacttgtatttgtttaggttctagtgatgagacatacttat |
119 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29518564 |
tgtttatcgccatgtctaatgagaggaagcgtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatacttat |
29518465 |
T |
|
| Q |
120 |
ctttagtgatcagacatacttatcttagtatttgtttaggttcccttgtgattgtttacttctctctatttgcaggacaaatgcttatgtgtttatttac |
219 |
Q |
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| |||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| | |||| ||||| | ||||||||||| |
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| T |
29518464 |
cgttagtgattagacatacttatcgtagtatttgtttaggttcccttatgattgtttacttctctctatttgctgaacaattgcttgtatgtttatttac |
29518365 |
T |
|
| Q |
220 |
atgatgttgctgaagaattgatattgataaagccttttattttcctcttattcgagtatcgtgtttttaagttttattgttactttgtatgacaggttat |
319 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29518364 |
atgatgttgctgaagaattgatattgataaagccttttattttcctctta-tcgagtatcgtgtttttaagttttattgttactttgtatgataggttat |
29518266 |
T |
|
| Q |
320 |
aactagaaccgatattgaaaaa |
341 |
Q |
| |
|
|||||||||| ||||||||||| |
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|
| T |
29518265 |
aactagaaccaatattgaaaaa |
29518244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 20 - 341
Target Start/End: Original strand, 5333507 - 5333823
Alignment:
| Q |
20 |
tgtttatcgccatgtctaattagaggaagcgtggatgggtacttaggccccaaggatataacttgtatttgtttaggttctagtgatgagacatacttat |
119 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5333507 |
tgtttatcgccatgtcta----gaggaagcgtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatacttat |
5333602 |
T |
|
| Q |
120 |
ctttagtgatcagacatacttatcttagtatttgtttaggttcccttgtgattgtttacttctctctatttgcaggacaaatgcttatgtgtttatttac |
219 |
Q |
| |
|
| |||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| | |||| ||||||| ||||||||||| |
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|
| T |
5333603 |
cgttagtgattagacatacttatcgtagtatttgtttaggttcccttatgattgtttacttctctctatttgctgaacaattgcttatatgtttatttac |
5333702 |
T |
|
| Q |
220 |
atgatgttgctgaagaattgatattgataaagccttttattttcctcttattcgagtatcgtgtttttaagttttattgttactttgtatgacaggttat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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|
| T |
5333703 |
atgatgttgctgaagaattgatattgataaagccttttattttcctctta-tcgagtatcgtgtttttaagttttattgttattttgtatgataggttat |
5333801 |
T |
|
| Q |
320 |
aactagaaccgatattgaaaaa |
341 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
5333802 |
aactagaaccgatattgaaaaa |
5333823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 45335158 - 45335045
Alignment:
| Q |
50 |
gtggatgggtacttaggccccaaggatataacttgtatttgtttaggttctagtgatgagacatacttatctttagtgatcagacatacttatcttagta |
149 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45335158 |
gtggatgggtacttaggctctaaggatataacttgaatttgtttaggttctagtgatgagacatacttatctttagtgatcagacatacttatcttagta |
45335059 |
T |
|
| Q |
150 |
tttgtttaggttcc |
163 |
Q |
| |
|
|||||||||||||| |
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|
| T |
45335058 |
tttgtttaggttcc |
45335045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 12836018 - 12836156
Alignment:
| Q |
20 |
tgtttatcgccatgtctaattagaggaagcgtggatgggtacttaggccccaaggatataacttgtatttgtttaggttctagtgatgagacatactt-- |
117 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
12836018 |
tgtttatcgccatgcctaatgagaggaagcgtggatgggtacttaggctctaaggatataacatgtatttgtttaggttctagtgatgagacatacttat |
12836117 |
T |
|
| Q |
118 |
-atctttagtgatcagacatacttatcttagtatttgtt |
155 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12836118 |
catctttagtgatcaaacatacttatcttagtatttgtt |
12836156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 196 - 341
Target Start/End: Original strand, 12836159 - 12836301
Alignment:
| Q |
196 |
acaaatgcttatgtgtttatttacatgatgttgctgaagaattgatattgataaagccttttattttcctcttattcgagtatcgtgtttttaagtttta |
295 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
12836159 |
acaattgcttgtgtgtttatttacatgatgttgctga-gaattgatattg-taaaaccttttattttcctcttat-cgagtatcgtgtttttaagtttta |
12836255 |
T |
|
| Q |
296 |
ttgttactttgtatgacaggttataactagaaccgatattgaaaaa |
341 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
12836256 |
ttgttactttgtatgacaagttataactataactgatattgaaaaa |
12836301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 38274460 - 38274365
Alignment:
| Q |
20 |
tgtttatcgccatgtctaattagaggaagcgtggatgggtacttaggccccaaggatataacttgtatttgtttaggttctagtgatgagacatac |
115 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38274460 |
tgtttatcgccatgtctaatgagaggaagcgtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatac |
38274365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 275 - 341
Target Start/End: Complemental strand, 20176397 - 20176331
Alignment:
| Q |
275 |
gtatcgtgtttttaagttttattgttactttgtatgacaggttataactagaaccgatattgaaaaa |
341 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
20176397 |
gtatcgtgtttttaagttttattgttattttgtatgataggttataactagaaccgatattgaaaaa |
20176331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 196 - 341
Target Start/End: Complemental strand, 21116907 - 21116765
Alignment:
| Q |
196 |
acaaatgcttatgtgtttatttacatgatgttgctgaagaattgatattgataaagccttttattttcctcttattcgagtatcgtgtttttaagtttta |
295 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
21116907 |
acaattgcttgtgtgtttatttacatgatgttgctga-gaattgatattg-taaaaccttttattttcctcttat-cgagtatcgtgtttttaagtttta |
21116811 |
T |
|
| Q |
296 |
ttgttactttgtatgacaggttataactagaaccgatattgaaaaa |
341 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
21116810 |
ttgttactttgtatgacaggttataactataactgatattgaaaaa |
21116765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 196 - 341
Target Start/End: Complemental strand, 10626081 - 10625939
Alignment:
| Q |
196 |
acaaatgcttatgtgtttatttacatgatgttgctgaagaattgatattgataaagccttttattttcctcttattcgagtatcgtgtttttaagtttta |
295 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||| |||| |||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
10626081 |
acaattgcttgtgtgtttatttacatgatgtttctga-gaattgatattg-taaaaccttttattttcctcttat-cgagtatcgtgtttttaagtttta |
10625985 |
T |
|
| Q |
296 |
ttgttactttgtatgacaggttataactagaaccgatattgaaaaa |
341 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
10625984 |
ttgttactttgtatgacaggttataactataactgatattgaaaaa |
10625939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 21117048 - 21116910
Alignment:
| Q |
20 |
tgtttatcgccatgtctaattagaggaagcgtggatgggtacttaggccccaaggatataacttgtatttgtttaggttctagtgatgagacatactt-- |
117 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||| | ||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
21117048 |
tgtttatcgccatgcctaatgagaggaagcgtggatggatgcttaggctctaaggatataacctgtatttgtttaggttctagtgatgagacatacttat |
21116949 |
T |
|
| Q |
118 |
-atctttagtgatcagacatacttatcttagtatttgtt |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21116948 |
catctttagtgatcagacatacttatcttagtatttgtt |
21116910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 10626222 - 10626087
Alignment:
| Q |
20 |
tgtttatcgccatgtctaattagaggaagcgtggatgggtacttaggccccaaggatataacttgtatttgtttaggttctagtgatgagacatactt-- |
117 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||| ||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
10626222 |
tgtttatcgccatgcctaatgagaggaagcgtggatggatacttaggctctaaggatataacctgtatttgtttaggttctagtgatgagacatacttat |
10626123 |
T |
|
| Q |
118 |
-atctttagtgatcagacatacttatcttagtattt |
152 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
10626122 |
catctttagtgatttgacatacttatcttagtattt |
10626087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 186 - 341
Target Start/End: Complemental strand, 1239997 - 1239845
Alignment:
| Q |
186 |
tatttgcaggacaaatgcttatgtgtttatttacatgatgttgctgaagaattgatattgataaagccttttattttcctcttattcgagtatcgtgttt |
285 |
Q |
| |
|
||||||| | |||| ||||| ||||||||||||||||||||| |||| |||||||||||| |||| ||||||||||||||||||| |||||||||||||| |
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|
| T |
1239997 |
tatttgctgaacaattgcttgtgtgtttatttacatgatgtttctga-gaattgatattg-taaaaccttttattttcctcttat-cgagtatcgtgttt |
1239901 |
T |
|
| Q |
286 |
ttaagttttattgttactttgtatgacaggttataactagaaccgatattgaaaaa |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
1239900 |
ttaagttttattgttactttgtatgacaggttataactataactgatattgaaaaa |
1239845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 1240128 - 1239992
Alignment:
| Q |
20 |
tgtttatcgccatgtctaattagaggaagcgtggatgggtacttaggccccaaggatataacttgtatttgtttaggttctagtgatgagacatactt-- |
117 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||| ||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1240128 |
tgtttatcgccatgcctaatgagaggaagcgtggatggatacttaggctctaaggatataacctgtatttgtttaggttctagtgatgagacatacttat |
1240029 |
T |
|
| Q |
118 |
-atctttagtgatcagacatacttatcttagtatttg |
153 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1240028 |
catctttagtgatcggacatacttatcttagtatttg |
1239992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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