View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17363_high_1 (Length: 225)
Name: NF17363_high_1
Description: NF17363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17363_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 38005692 - 38005509
Alignment:
| Q |
1 |
aaacataggtgttttatcaccttcgcttgagccacacggcactgttcgatcaacacgaagagctcgaatcgtcagcattgcattcgagttgttttacaac |
100 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
38005692 |
aaacatcgttgttttatcaccttcgcttgagccacacggcactgttcgatcaacacgaagagctcgaatcgtcggcattgcatttgagttgttttacaac |
38005593 |
T |
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| Q |
101 |
aaaatctcgcaaatgccagttgcaccaaaaattgatttttgtaagttttgtaagatttgggctggtgaagatggtgacatgtat |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38005592 |
aaaatctcgcaaatgccagttgcaccaaaaattgatttttgtaagttttgtaagatttgggctggtgaagatggtgacatgtat |
38005509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 26462121 - 26462304
Alignment:
| Q |
1 |
aaacataggtgttttatcaccttcgcttgagccacacggcactgttcgatcaacacgaagagctcgaatcgtcagcattgcattcgagttgttttacaac |
100 |
Q |
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|||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
26462121 |
aaacatcgttgttttatcgccttcgcttgagccacacggcactgttcggtcaacacgaagagctcgaatcgtaggcattgcattcgagttgttttacagc |
26462220 |
T |
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| Q |
101 |
aaaatctcgcaaatgccagttgcaccaaaaattgatttttgtaagttttgtaagatttgggctggtgaagatggtgacatgtat |
184 |
Q |
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||||| || ||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26462221 |
aaaatatctgaaatgcctgtttcaccaaaaattgatttttgtaacttttgtaagatttgggctggtgaagatggtgacatgtat |
26462304 |
T |
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