View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17363_low_3 (Length: 243)
Name: NF17363_low_3
Description: NF17363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17363_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 52300591 - 52300807
Alignment:
| Q |
12 |
atgaacttgaagaagtaaatcgagaaaaagattggacctatcttgtatttggtccactatccttcattcagctaaattatttgtaggtgtaaacaactnn |
111 |
Q |
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| T |
52300591 |
atgaacttgaagaagtaaatcgagaaaaagattg-acctatcttgtatttggtccactatccttcattcagctaaattatttgtaggtgtaaacaactta |
52300689 |
T |
|
| Q |
112 |
nnnnnn--ttaaaataataagccaatattcatattggcctttgtcatctacgctgatctttgaatttaacttgaatatcacctataagaataccatttaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52300690 |
aaaaaaaattaaaataataagccaatattcatattggcctttgtcatctacgctgatctttgaatttaacttgaatatcacctataagaataccatttaa |
52300789 |
T |
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| Q |
210 |
aattatttacgtaataag |
227 |
Q |
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|||||||||||||||||| |
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| T |
52300790 |
aattatttacgtaataag |
52300807 |
T |
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