View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17364_high_13 (Length: 356)

Name: NF17364_high_13
Description: NF17364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17364_high_13
NF17364_high_13
[»] chr3 (4 HSPs)
chr3 (1-343)||(190574-190905)
chr3 (52-95)||(31708071-31708114)
chr3 (13-54)||(21513364-21513405)
chr3 (8-49)||(38540277-38540318)
[»] chr1 (2 HSPs)
chr1 (3-54)||(27500311-27500362)
chr1 (1-54)||(1233331-1233384)
[»] chr4 (1 HSPs)
chr4 (53-107)||(52063117-52063171)
[»] chr7 (6 HSPs)
chr7 (52-92)||(7087357-7087397)
chr7 (3-54)||(18349801-18349852)
chr7 (52-92)||(17908163-17908203)
chr7 (14-50)||(19098504-19098540)
chr7 (52-92)||(39054075-39054115)
chr7 (52-92)||(45369142-45369182)
[»] chr5 (3 HSPs)
chr5 (1-40)||(7925426-7925465)
chr5 (53-92)||(29922874-29922913)
chr5 (54-90)||(8591324-8591360)
[»] chr6 (3 HSPs)
chr6 (55-92)||(26550658-26550695)
chr6 (52-92)||(6544564-6544604)
chr6 (10-54)||(30582859-30582903)


Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 190905 - 190574
Alignment:
Q  1 agtgagatgaacaataaatttgagtgcaaaaatcatgtttggaggcaaaagctagcttcaagttaaaatcaattctaaagacaaaatcaattataaccag 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  190905 agtgagttgaacaataaatttgagtgcaaaaatcatgtttggaggcaaaagctagcttcaagttaaaatcaattctaaagacaaaatcaattataaccag 190806  T
Q  101 gaaccccaaacgtatcaaaatcaattttaactctcccaaaagtgaatccaaagatgcacttaatttagattaaatcacaagcaatccaactgtataagaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||    
T  190805 gaaccccaaacgtatcaaaatcaattttaactctcccaaaag-----------atgcacttaatttagattaaatcacaagcaatccaactgtataagaa 190717  T
Q  201 ttaagcaccaactccagaatagatggtgattgacttcaataaaggtacaaactaggaggatgctcaacatgaaacatccctaattgcccacccccttaga 300  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  190716 ttaagcaccaagtccagaatagatggtgattgacttcaataaaggtacaaactaggaggatgctcaacatgaaacatccctaattgcccaccccattaga 190617  T
Q  301 ttcttcaccatagactctaaaaagtaagaaaaaacatgttcct 343  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  190616 ttcttcaccatagactctaaaaagtaagaaaaaacatgttcct 190574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 31708114 - 31708071
Alignment:
Q  52 ctagcttcaagttaaaatcaattctaaagacaaaatcaattata 95  Q
    |||||||||||||| ||||| |||||||| ||||||||||||||    
T  31708114 ctagcttcaagttagaatcatttctaaagtcaaaatcaattata 31708071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 21513364 - 21513405
Alignment:
Q  13 aataaatttgagtgcaaaaatcatgtttggaggcaaaagcta 54  Q
    |||||||||||||| |||||||| |||||||| |||||||||    
T  21513364 aataaatttgagtgtaaaaatcacgtttggagtcaaaagcta 21513405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 38540277 - 38540318
Alignment:
Q  8 tgaacaataaatttgagtgcaaaaatcatgtttggaggcaaa 49  Q
    ||||||| ||||| ||||| ||||||||||||||||||||||    
T  38540277 tgaacaagaaattggagtgtaaaaatcatgtttggaggcaaa 38540318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 27500362 - 27500311
Alignment:
Q  3 tgagatgaacaataaatttgagtgcaaaaatcatgtttggaggcaaaagcta 54  Q
    |||| ||||||||||||||||||| |||||| ||||||||||| ||||||||    
T  27500362 tgagttgaacaataaatttgagtgtaaaaataatgtttggagggaaaagcta 27500311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 1233384 - 1233331
Alignment:
Q  1 agtgagatgaacaataaatttgagtgcaaaaatcatgtttggaggcaaaagcta 54  Q
    |||||| | ||||||||||||||||| ||||||||||||  ||| |||||||||    
T  1233384 agtgagttcaacaataaatttgagtgtaaaaatcatgttcagagccaaaagcta 1233331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 52063117 - 52063171
Alignment:
Q  53 tagcttcaagttaaaatcaattctaaagacaaaatcaattataaccaggaacccc 107  Q
    ||||||||||||| ||||| ||||| || ||||||||||||||| ||||||||||    
T  52063117 tagcttcaagttagaatcatttctataggcaaaatcaattataatcaggaacccc 52063171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 7087357 - 7087397
Alignment:
Q  52 ctagcttcaagttaaaatcaattctaaagacaaaatcaatt 92  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  7087357 ctagcttcaagttaaaaccaattctaaaaacaaaatcaatt 7087397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 18349852 - 18349801
Alignment:
Q  3 tgagatgaacaataaatttgagtgcaaaaatcatgtttggaggcaaaagcta 54  Q
    |||| ||||||||||||||||||| |||||||| ||||| || |||||||||    
T  18349852 tgagttgaacaataaatttgagtgtaaaaatcacgtttgaagtcaaaagcta 18349801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 17908203 - 17908163
Alignment:
Q  52 ctagcttcaagttaaaatcaattctaaagacaaaatcaatt 92  Q
    ||||||||| |||| ||||||||||| ||||||||||||||    
T  17908203 ctagcttcatgttagaatcaattctagagacaaaatcaatt 17908163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 19098504 - 19098540
Alignment:
Q  14 ataaatttgagtgcaaaaatcatgtttggaggcaaaa 50  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  19098504 ataaatttgagtgtaaaaattatgtttggaggcaaaa 19098540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 39054115 - 39054075
Alignment:
Q  52 ctagcttcaagttaaaatcaattctaaagacaaaatcaatt 92  Q
    |||||||| ||||| ||||||||||| ||||||||||||||    
T  39054115 ctagcttcgagttagaatcaattctagagacaaaatcaatt 39054075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 45369182 - 45369142
Alignment:
Q  52 ctagcttcaagttaaaatcaattctaaagacaaaatcaatt 92  Q
    |||||||||||||||||||||||||| |  |||||||||||    
T  45369182 ctagcttcaagttaaaatcaattctagaagcaaaatcaatt 45369142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 7925465 - 7925426
Alignment:
Q  1 agtgagatgaacaataaatttgagtgcaaaaatcatgttt 40  Q
    |||||| ||||||||||||||||||| |||||||||||||    
T  7925465 agtgagttgaacaataaatttgagtgtaaaaatcatgttt 7925426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 29922913 - 29922874
Alignment:
Q  53 tagcttcaagttaaaatcaattctaaagacaaaatcaatt 92  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  29922913 tagcttcaagttaaaatcaattcttgagacaaaatcaatt 29922874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 8591360 - 8591324
Alignment:
Q  54 agcttcaagttaaaatcaattctaaagacaaaatcaa 90  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  8591360 agcttcaagttaaaatcaattctaaagtcaacatcaa 8591324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 26550695 - 26550658
Alignment:
Q  55 gcttcaagttaaaatcaattctaaagacaaaatcaatt 92  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  26550695 gcttcaagataaaatcaattctagagacaaaatcaatt 26550658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 6544564 - 6544604
Alignment:
Q  52 ctagcttcaagttaaaatcaattctaaagacaaaatcaatt 92  Q
    |||||||||||||| |||||||||| ||| |||||||||||    
T  6544564 ctagcttcaagttagaatcaattctgaaggcaaaatcaatt 6544604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 30582859 - 30582903
Alignment:
Q  10 aacaataaatttgagtgcaaaaatcatgtttggaggcaaaagcta 54  Q
    |||||||||| |||||| | ||||||||||||||| |||||||||    
T  30582859 aacaataaatgtgagtgtataaatcatgtttggagacaaaagcta 30582903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University