View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17364_high_19 (Length: 228)
Name: NF17364_high_19
Description: NF17364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17364_high_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 33344216 - 33344023
Alignment:
| Q |
16 |
tgtgatctgcccatgcgctcatgttgtattgtgttcacgtcgttgatatgtgaccatatagaaatgtacccattttaagatgttatcttcaaggtagcag |
115 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33344216 |
tgtgatctgcccatgcactcatgttgta--gtgttcacgtcgttgatatgtgaccatatagaaatgtacccattttaagatgttatcttcaaggtagcag |
33344119 |
T |
|
| Q |
116 |
cgtcccttggaaagtggactttcacttgagggatcaaactgtaaatgacttcaatcttggatagatatttaatttatgcagttagaggatcacaac |
211 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33344118 |
cgtcccttggaaaatggactttcacttgagggatcaaactgtaaatgacttcaatcttggatagatatttaatttatgcagttagaggatcacaac |
33344023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 33319108 - 33318917
Alignment:
| Q |
16 |
tgtgatctgcccatgcgctcatgttgtattgtgttcacgtcgttgatatgtgaccatatagaaatgtacccattttaagatgttatcttcaaggtagcag |
115 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||| ||||||||| |||| ||||||| |
|
|
| T |
33319108 |
tgtgatctgcccatgcactcatgttgtattgtgttcacgtcattgatacgtgaccatatagaaatgtaccttttttacgatgttatcatcaaagtagcag |
33319009 |
T |
|
| Q |
116 |
cgtcccttggaaagtggactttcacttgagggatcaaactgtaaatgacttcaatcttggatagatatttaatttatgcagttagaggatca |
207 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33319008 |
cgtccctcggaaaatggactttcacttgagggatcaaactgtaaatgacttatgtcttggatagatatttaatttatgcagtttgaggatca |
33318917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University