View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17364_high_2 (Length: 609)

Name: NF17364_high_2
Description: NF17364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17364_high_2
NF17364_high_2
[»] chr4 (3 HSPs)
chr4 (247-592)||(42265020-42265360)
chr4 (21-177)||(42264794-42264950)
chr4 (98-177)||(12861010-12861089)
[»] chr6 (3 HSPs)
chr6 (451-532)||(20361732-20361813)
chr6 (414-445)||(10740748-10740779)
chr6 (415-447)||(13166603-13166635)
[»] chr7 (3 HSPs)
chr7 (98-177)||(16653697-16653776)
chr7 (98-177)||(17628057-17628136)
chr7 (414-452)||(10414219-10414257)
[»] chr8 (1 HSPs)
chr8 (93-174)||(43695634-43695714)
[»] chr2 (1 HSPs)
chr2 (414-449)||(2483666-2483701)
[»] chr5 (1 HSPs)
chr5 (414-452)||(24135092-24135130)


Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 247 - 592
Target Start/End: Original strand, 42265020 - 42265360
Alignment:
Q  247 acaaactcttgatgcctagtgttattggatcatgagtttaaggggaagtttgagataataggttactgcggttatgatattcgcttgtat----tcaata 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    ||||||    
T  42265020 acaaactcttgatgcctagtgttattggatcatgagtttaaggggaagttt-agataataggttactgcggttatgatatttgcttgtatatattcaata 42265118  T
Q  343 ttatgcaatgccattgtcattcttatgaaaccctagccagctcctttattattatattgaaactgtagatggttaacatggtatcaagagcatggtttga 442  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||        ||||||||||||    
T  42265119 ttatgcaatgccattgtcattcttatgaaaccctagccggctcctttattattatattgaaaccgtagatggttaacatg--------agcatggtttga 42265210  T
Q  443 tccgctttgattgagtgtcttgtgcctcttgttaattttgttcgtctctggttgttatgtttctcctatttcacttggattagtttggttatgttctttt 542  Q
    |||||||||||| ||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42265211 tccgctttgattcagtgtctcgtgtctcttgttaattttgttcgtctctgattgttatgtttctcctatttcacttggattagtttggttatgttctttt 42265310  T
Q  543 tggtggtttcgctttggttcacattggtcttcaatttgttttggtttgat 592  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42265311 tggtggtttcgctttggttcacattggtcttcaatttgttttggtttgat 42265360  T

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Target: chr4; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 21 - 177
Target Start/End: Original strand, 42264794 - 42264950
Alignment:
Q  21 gtacgtcaaaaagcttacgttttttgtgctccttttcacataggtagtcataaaacttcatgagaaatgtatttgtgactcttaattcctctaaaagatc 120  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42264794 gtacgtcaaaaagcttacgatttttgtgctccttttcacataggtagtcataaaacttcatgagaaatgtatttgtgactcttaattcctctaaaagatc 42264893  T
Q  121 tcatacatcagattctgaataatgacgaggtcgagtcttttgcatcacagtaagttg 177  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42264894 tcatacatcagattctgaataatgacgaggtcaagtcttttgcatcacagtaagttg 42264950  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 12861089 - 12861010
Alignment:
Q  98 actcttaattcctctaaaagatctcatacatcagattctgaataatgacgaggtcgagtcttttgcatcacagtaagttg 177  Q
    ||||| ||||| |||||||| || || ||||||||||| |||||||||||||||||||| | |||||| |||||||||||    
T  12861089 actctcaattcatctaaaagttcccagacatcagattcagaataatgacgaggtcgagtttgttgcatgacagtaagttg 12861010  T

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Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 451 - 532
Target Start/End: Original strand, 20361732 - 20361813
Alignment:
Q  451 gattgagtgtcttgtgcctcttgttaattttgttcgtctctggttgttatgtttctcctatttcacttggattagtttggtt 532  Q
    |||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||| |||||   ||||||||||||||||    
T  20361732 gattgagtgtcttgtgcctcttgtcaattttgtttgtctctagttgttatgtttctcatatttgtgttggattagtttggtt 20361813  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 445
Target Start/End: Original strand, 10740748 - 10740779
Alignment:
Q  414 gttaacatggtatcaagagcatggtttgatcc 445  Q
    ||||||||||||||||||||||||||||||||    
T  10740748 gttaacatggtatcaagagcatggtttgatcc 10740779  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 415 - 447
Target Start/End: Original strand, 13166603 - 13166635
Alignment:
Q  415 ttaacatggtatcaagagcatggtttgatccgc 447  Q
    ||||||||||||||||||||| |||||||||||    
T  13166603 ttaacatggtatcaagagcatcgtttgatccgc 13166635  T

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Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 16653776 - 16653697
Alignment:
Q  98 actcttaattcctctaaaagatctcatacatcagattctgaataatgacgaggtcgagtcttttgcatcacagtaagttg 177  Q
    ||||| ||||| |||||||| ||||| ||||||||||| |||||||||||||||||||| | |||||| |||||||||||    
T  16653776 actctcaattcatctaaaagttctcagacatcagattcagaataatgacgaggtcgagtttgttgcatgacagtaagttg 16653697  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 17628136 - 17628057
Alignment:
Q  98 actcttaattcctctaaaagatctcatacatcagattctgaataatgacgaggtcgagtcttttgcatcacagtaagttg 177  Q
    ||||| ||||| |||||||| ||||| ||||||||||| |||||||||||||||||||| | |||||| |||||||||||    
T  17628136 actctcaattcatctaaaagttctcagacatcagattcagaataatgacgaggtcgagtttgttgcatgacagtaagttg 17628057  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 452
Target Start/End: Original strand, 10414219 - 10414257
Alignment:
Q  414 gttaacatggtatcaagagcatggtttgatccgctttga 452  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  10414219 gttaacatggtatcaagagcatggtttgatccgttttga 10414257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 43695714 - 43695634
Alignment:
Q  93 ttgtgactcttaattcctctaaaagatctcatacatcagattctgaataatgacgaggtcgagtcttttgcatcacagtaag 174  Q
    |||| |||||||||| ||||||||||||  |||||||||||| ||||||||||||| || |||| | |||||||||||||||    
T  43695714 ttgtcactcttaatttctctaaaagatcctatacatcagattttgaataatgacga-gtagagtttgttgcatcacagtaag 43695634  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 449
Target Start/End: Original strand, 2483666 - 2483701
Alignment:
Q  414 gttaacatggtatcaagagcatggtttgatccgctt 449  Q
    |||||||||||||||||||||||||| |||||||||    
T  2483666 gttaacatggtatcaagagcatggttcgatccgctt 2483701  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 452
Target Start/End: Original strand, 24135092 - 24135130
Alignment:
Q  414 gttaacatggtatcaagagcatggtttgatccgctttga 452  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  24135092 gttaagatggtatcaagagcgtggtttgatccgctttga 24135130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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