View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17364_high_21 (Length: 217)
Name: NF17364_high_21
Description: NF17364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17364_high_21 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 43195099 - 43194883
Alignment:
| Q |
1 |
catcactcaccaccttccttgtgacgctgacggtgtatgcatggtctgcaaacaaaaaccatcagaaaccgaaacacttcattgcaaaacctgcacaaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43195099 |
catcactcaccaccttccttgtgacgctgacggtgtatgcatggtttgcaaacaaaaaccatcagaaaccgaaacacttcattgcaaaacctgcacaaca |
43195000 |
T |
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| Q |
101 |
ccatggcatgctccttgtctccctgttgttccaacaacaagtgaaatgctctattggttgtgtcctgattgtgctcaaccaagtgatgttgttgctgctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43194999 |
ccatggcatgctccttgtctccctgttgttccaacaacaagtgaaatgctcgattggttgtgtcctgattgtgctcaaccaagtgatgttgttgctgctt |
43194900 |
T |
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| Q |
201 |
ctgctgctccgtctgtt |
217 |
Q |
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||||||||||||||||| |
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| T |
43194899 |
ctgctgctccgtctgtt |
43194883 |
T |
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