View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17364_high_8 (Length: 388)

Name: NF17364_high_8
Description: NF17364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17364_high_8
NF17364_high_8
[»] chr8 (5 HSPs)
chr8 (1-373)||(1569104-1569476)
chr8 (57-185)||(1761488-1761616)
chr8 (306-373)||(45375152-45375219)
chr8 (303-361)||(42841616-42841674)
chr8 (313-359)||(33112292-33112338)
[»] chr5 (4 HSPs)
chr5 (306-373)||(10360373-10360440)
chr5 (303-373)||(33451281-33451351)
chr5 (306-373)||(13563424-13563491)
chr5 (313-357)||(37923495-37923539)
[»] chr1 (2 HSPs)
chr1 (306-373)||(52128938-52129005)
chr1 (304-365)||(45811823-45811883)
[»] chr3 (4 HSPs)
chr3 (313-373)||(53829260-53829320)
chr3 (306-373)||(34267738-34267805)
chr3 (306-373)||(44449962-44450029)
chr3 (313-357)||(34266842-34266886)
[»] chr7 (2 HSPs)
chr7 (304-373)||(36105970-36106039)
chr7 (68-152)||(19206508-19206592)
[»] scaffold0147 (1 HSPs)
scaffold0147 (68-152)||(9008-9092)
[»] chr6 (1 HSPs)
chr6 (333-373)||(34993292-34993332)
[»] chr4 (1 HSPs)
chr4 (322-362)||(50715334-50715374)
[»] chr2 (1 HSPs)
chr2 (313-361)||(6605551-6605599)


Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 1569104 - 1569476
Alignment:
Q  1 tgcattatggtttcagtttcacttatgaccttctccacttcaatcgctagcaaaggaagataataggccactcctaggaaaaggtatattatcatcaagt 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1569104 tgcattatggtttcagtttcacttatgacctactccacttcaatcgctagcaaaggaagataataggccactcctaggaaaaggtatattatcatcaagt 1569203  T
Q  101 ggactcttttgggctcatcaaaggaagataattgcccctgaattgtacctagttaaaatgaaggtaactctatatattctacgtattaaaaggtgtatta 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1569204 ggactcttttcggctcatcaaaggaagataattgcccctgaattgtacctagttaaaatgaaggtaactctatatattctacgtattaagaggtgtatta 1569303  T
Q  201 aaaatacatcttctaacacacccgttctttttctattgatttaaatttatataggtttcactaagagcatctcctatggtatctgttgagcctaatagga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1569304 aaaatacatcttctaacacacccgttctttttctattgatttaaatttatataggtttcactaagagcatctcctatggtatgtgttgagcctaatagga 1569403  T
Q  301 tgtagggcaacctttagcattgggaaattggcatatttccccatcttagatcaatttaacaagggctattgat 373  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  1569404 tgtagggcaacctttagcattgggaaattggcatatttttccatcttagatcaatttaacaagggctattgat 1569476  T

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Target: chr8; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 57 - 185
Target Start/End: Original strand, 1761488 - 1761616
Alignment:
Q  57 aagataataggccactcctaggaaaaggtatattatcatcaagtggactcttttgggctcatcaaaggaagataattgcccctgaattgtacctagttaa 156  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  1761488 aagataataggccactccttggaaaaggtatattatcatcaagtggacttttttgggctcatcaaaggaagattattgcccctgaattgtacctagataa 1761587  T
Q  157 aatgaaggtaactctatatattctacgta 185  Q
    ||||||||||| | ||||| |||||||||    
T  1761588 aatgaaggtaagtttatatcttctacgta 1761616  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 306 - 373
Target Start/End: Original strand, 45375152 - 45375219
Alignment:
Q  306 ggcaacctttagcattgggaaattggcatatttccccatcttagatcaatttaacaagggctattgat 373  Q
    |||||| |||||||| ||||||||| |||||||| ||||||||| |||||||||||||||| ||||||    
T  45375152 ggcaacgtttagcatggggaaattgacatatttctccatcttaggtcaatttaacaagggccattgat 45375219  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 361
Target Start/End: Complemental strand, 42841674 - 42841616
Alignment:
Q  303 tagggcaacctttagcattgggaaattggcatatttccccatcttagatcaatttaaca 361  Q
    ||||||||| |||||||| |||||||||| |||||| || ||||||| |||||||||||    
T  42841674 tagggcaacgtttagcatggggaaattggtatattttcctatcttaggtcaatttaaca 42841616  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 359
Target Start/End: Original strand, 33112292 - 33112338
Alignment:
Q  313 tttagcattgggaaattggcatatttccccatcttagatcaatttaa 359  Q
    |||||||| ||||||||||||||||| || ||||||| |||||||||    
T  33112292 tttagcatggggaaattggcatattttcctatcttaggtcaatttaa 33112338  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 306 - 373
Target Start/End: Original strand, 10360373 - 10360440
Alignment:
Q  306 ggcaacctttagcattgggaaattggcatatttccccatcttagatcaatttaacaagggctattgat 373  Q
    |||||| |||||||| || ||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  10360373 ggcaacgtttagcatgggaaaattggcatatttccccatcttaggtcaatttaacaagggccattgat 10360440  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 303 - 373
Target Start/End: Original strand, 33451281 - 33451351
Alignment:
Q  303 tagggcaacctttagcattgggaaattggcatatttccccatcttagatcaatttaacaagggctattgat 373  Q
    ||||||||| |||||||| | |||||||||||||||| ||||||||| |||||||||||||||| ||||||    
T  33451281 tagggcaacgtttagcatggagaaattggcatatttctccatcttaggtcaatttaacaagggccattgat 33451351  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 373
Target Start/End: Complemental strand, 13563491 - 13563424
Alignment:
Q  306 ggcaacctttagcattgggaaattggcatatttccccatcttagatcaatttaacaagggctattgat 373  Q
    |||||| |||||||| ||||||||| |||||||| ||||||||  |||||||||||||||| ||||||    
T  13563491 ggcaacgtttagcatggggaaattgacatatttctccatcttaagtcaatttaacaagggccattgat 13563424  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 357
Target Start/End: Complemental strand, 37923539 - 37923495
Alignment:
Q  313 tttagcattgggaaattggcatatttccccatcttagatcaattt 357  Q
    |||||||| ||| ||||| || |||||||||||||||||||||||    
T  37923539 tttagcatggggcaattgtcaaatttccccatcttagatcaattt 37923495  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 306 - 373
Target Start/End: Original strand, 52128938 - 52129005
Alignment:
Q  306 ggcaacctttagcattgggaaattggcatatttccccatcttagatcaatttaacaagggctattgat 373  Q
    |||||| |||||||| || ||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  52128938 ggcaacgtttagcatgggaaaattggcatatttctccatcttagatcaatttaacaagggccattgat 52129005  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 45811823 - 45811883
Alignment:
Q  304 agggcaacctttagcattgggaaattggcatatttccccatcttagatcaatttaacaaggg 365  Q
    |||||||| |||||||| ||||||||||||||||| |||||||||| || ||||||||||||    
T  45811823 agggcaacatttagcat-gggaaattggcatattttcccatcttaggtcgatttaacaaggg 45811883  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 313 - 373
Target Start/End: Complemental strand, 53829320 - 53829260
Alignment:
Q  313 tttagcattgggaaattggcatatttccccatcttagatcaatttaacaagggctattgat 373  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||| |||||| ||||||    
T  53829320 tttagcatggggaaattggcatatttctccatcttagatcaatttaataagggccattgat 53829260  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 306 - 373
Target Start/End: Complemental strand, 34267805 - 34267738
Alignment:
Q  306 ggcaacctttagcattgggaaattggcatatttccccatcttagatcaatttaacaagggctattgat 373  Q
    |||||| ||||| || || ||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  34267805 ggcaacgtttagtatgggaaaattggcatatttctccatctttgatcaatttaacaagggctattgat 34267738  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 306 - 373
Target Start/End: Original strand, 44449962 - 44450029
Alignment:
Q  306 ggcaacctttagcattgggaaattggcatatttccccatcttagatcaatttaacaagggctattgat 373  Q
    |||||| |||||||| || || |||  ||||||||||| |||||||||||||||||||||| ||||||    
T  44449962 ggcaacgtttagcatgggcaagttgatatatttccccaacttagatcaatttaacaagggccattgat 44450029  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 34266842 - 34266886
Alignment:
Q  313 tttagcattgggaaattggcatatttccccatcttagatcaattt 357  Q
    |||||||| || |||||| || |||||||||||||||||||||||    
T  34266842 tttagcatgggcaaattgtcaaatttccccatcttagatcaattt 34266886  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 304 - 373
Target Start/End: Original strand, 36105970 - 36106039
Alignment:
Q  304 agggcaacctttagcattgggaaattggcatatttccccatcttagatcaatttaacaagggctattgat 373  Q
    |||||||  |||||||| | ||||||||||||||||| |||||||| ||||||||||||| |||||||||    
T  36105970 agggcaatgtttagcatggagaaattggcatatttcctcatcttaggtcaatttaacaagagctattgat 36106039  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 19206508 - 19206592
Alignment:
Q  68 ccactcctaggaaaaggtatattatcatcaagtggactcttttgggctcatcaaaggaagataattgcccctgaattgtacctag 152  Q
    |||||||| ||  |||||||| ||||||||||||| ||  ||||| ||||||| ||||||||||| || ||||||||||||||||    
T  19206508 ccactccttggccaaggtatagtatcatcaagtggtctgatttggtctcatcagaggaagataatcgcgcctgaattgtacctag 19206592  T

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Target: scaffold0147 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 9008 - 9092
Alignment:
Q  68 ccactcctaggaaaaggtatattatcatcaagtggactcttttgggctcatcaaaggaagataattgcccctgaattgtacctag 152  Q
    |||||||| ||  |||||||| ||||||||||||| |   ||||||| ||||| || ||||||||||| ||||| ||||||||||    
T  9008 ccactccttggccaaggtataatatcatcaagtggtccgatttgggcacatcagagaaagataattgcgcctgagttgtacctag 9092  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 373
Target Start/End: Complemental strand, 34993332 - 34993292
Alignment:
Q  333 atatttccccatcttagatcaatttaacaagggctattgat 373  Q
    ||||||||||| |||||||||||||||||||||| ||||||    
T  34993332 atatttccccaacttagatcaatttaacaagggccattgat 34993292  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 362
Target Start/End: Original strand, 50715334 - 50715374
Alignment:
Q  322 gggaaattggcatatttccccatcttagatcaatttaacaa 362  Q
    ||||||||| ||||||||| ||| |||||||||||||||||    
T  50715334 gggaaattgacatatttcctcatgttagatcaatttaacaa 50715374  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 361
Target Start/End: Original strand, 6605551 - 6605599
Alignment:
Q  313 tttagcattgggaaattggcatatttccccatcttagatcaatttaaca 361  Q
    ||||| || ||||||||| ||| |||||| |||||||||||||||||||    
T  6605551 tttagtatggggaaattgtcatctttccctatcttagatcaatttaaca 6605599  T

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