View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17364_low_11 (Length: 377)
Name: NF17364_low_11
Description: NF17364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17364_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 368
Target Start/End: Original strand, 21244207 - 21244557
Alignment:
| Q |
18 |
acatcatgtaatatttgtgtttttgaaattaaccaggttgcaccagcagaacttgaagatctactcgtttctcaccctgaaatacaagatgctgtcgttg |
117 |
Q |
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| T |
21244207 |
acatcatgtaatatttgtgtttttgaaattaaccaggttgcaccagcagaacttgaagatcttctcgtttctcaccctgaaatacaagatgctgtcgttg |
21244306 |
T |
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| Q |
118 |
tcccgtaagtnnnnnnncttgcatgatagttttagtttgaggtataaaactatcatcgcttataactattgatttgacacagagagagcggaatagctaa |
217 |
Q |
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| T |
21244307 |
tcccgtaagtaaaaaaacttgcatgatagttttagtttgaggtataaaactatcatcacttataactattgatttgacacagagagagcggaacaactaa |
21244406 |
T |
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| Q |
218 |
taaaaaatgaaatcgcacaccatataaatacaccgtgatggacaacaaaattatttttcaattgatacttctctactaatatttcatatttgagttactt |
317 |
Q |
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| T |
21244407 |
taaaaaatgaaatcgcacaccatataaatacaccgtgatggacaacaaaattatttttcaattgatacttctctattaatatttcatatttgagttactt |
21244506 |
T |
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| Q |
318 |
atttcaatagatttcctgatgatgaggctggtgaggtaccaattgcctatg |
368 |
Q |
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| T |
21244507 |
atttcaatagatttcctgatgatgaggctggtgaggtaccaattgcctatg |
21244557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 234 - 368
Target Start/End: Original strand, 21259619 - 21259758
Alignment:
| Q |
234 |
acaccatataaatacaccgtgatggacaacaaaatta-----tttttcaattgatacttctctactaatatttcatatttgagttacttatttcaataga |
328 |
Q |
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| T |
21259619 |
acaccatataaatataccatggtggacaacaaattaaaactgtttttcaattgatatttttctattaataatacacatttgagttacttattgctataga |
21259718 |
T |
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| Q |
329 |
tttcctgatgatgaggctggtgaggtaccaattgcctatg |
368 |
Q |
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| T |
21259719 |
tttcctgatgatgaggctggtgaggtttcaattgcctatg |
21259758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 116
Target Start/End: Original strand, 21259498 - 21259573
Alignment:
| Q |
41 |
tgaaattaaccaggttgcaccagcagaacttgaagatctactcgtttctcaccctgaaatacaagatgctgtcgtt |
116 |
Q |
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| T |
21259498 |
tgaaaataactaggttgcgccagcagcacttgaagatcttcttgtttctcatccagaaatacaagatgttgtcgtt |
21259573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 40806445 - 40806385
Alignment:
| Q |
52 |
aggttgcaccagcagaacttgaagatctactcgtttctcaccctgaaatacaagatgctgt |
112 |
Q |
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| T |
40806445 |
aggttgcaccagcagaacttgaaggtcttcttgtttctcatcctgaaatacttgatgctgt |
40806385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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