View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17364_low_13 (Length: 364)
Name: NF17364_low_13
Description: NF17364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17364_low_13 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold1482 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 10 - 364
Target Start/End: Original strand, 54349960 - 54350314
Alignment:
| Q |
10 |
gaagcatagggagatacatacattatgagcttgtcaagagctctttatatagggtcgaggagaccgttgtttagtcatggggcggccgtgatgaaaggtg |
109 |
Q |
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|||||||| |||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
54349960 |
gaagcataaagagatacatatattatgagcttgtcaacagctctttatatagagtcgaggagaccgttgtatagtcatggggcggccgtgatgaaaggtg |
54350059 |
T |
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| Q |
110 |
tccattatgactgagattgaatgagcgttaccaaccattggtagcagttatagactattattggtaggagaggattcaatactaagggttggctttgctt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54350060 |
tccattatgactgagattgaatgagcgttaccaaccattggtagcagttatagactattattggtaggagaggattcaatactaagggttggctttgctt |
54350159 |
T |
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| Q |
210 |
gttgggaatttgagtaattggaccctaatttatggtggactcggtttttgcctagtccaaaacaagtataatatttaggtaataaatgaggtaggtatac |
309 |
Q |
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| T |
54350160 |
gttgggaatttgagtaattggaccctaatttatggtggactcggttttcgcctagtccaaaacaggtataatatttaggtaataaatgaggtaggtatac |
54350259 |
T |
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| Q |
310 |
gagatttttaaaaaacaaatatactactgaataacaattgaaatttgtctggtca |
364 |
Q |
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| T |
54350260 |
gagatttttaaaaaacaaatatactactgaataacaattgaaatttgtctggtca |
54350314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 39907725 - 39907668
Alignment:
| Q |
20 |
gagatacatacattatgagcttgtcaagagctctttatatagggtcgaggagaccgtt |
77 |
Q |
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| T |
39907725 |
gagatacatacattgtgagtttgtccagagcttttaatatagggtcgacaagaccgtt |
39907668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 18651642 - 18651565
Alignment:
| Q |
12 |
agcatagggagatacatacattatgagcttgtcaagagctctttatatagggtcgaggagaccgttgtttagtcatgg |
89 |
Q |
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| T |
18651642 |
agcatagagagatacataccttatgagcttgtcaagagctcattatatagagtttaggagaccgttgtgtggtcatgg |
18651565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 1317215 - 1317162
Alignment:
| Q |
20 |
gagatacatacattatgagcttgtcaagagctctttatatagggtcgaggagac |
73 |
Q |
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| T |
1317215 |
gagatacatacattatgagcttgtcaagagtccattatataggatcgaggagac |
1317162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 247
Target Start/End: Original strand, 6120326 - 6120559
Alignment:
| Q |
10 |
gaagcatagggagatacatacattatgagcttgtcaagagctctttatatagggtcgaggagaccgttgtttagtcatggggcggccgtgatgaaaggtg |
109 |
Q |
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| T |
6120326 |
gaagcatagagatatacataccttgtgagcttgtcaaaagcgc---atatagggtcgaggagaccgttgtatggtcatggtacaatcattatgaaaggca |
6120422 |
T |
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| Q |
110 |
tccattatgactgagattgaatgagcgttaccaaccattggtagcagttatagactattattggtaggagaggattcaatactaagggttggctttgctt |
209 |
Q |
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| T |
6120423 |
tccattatgac-gggatcgaatggtcgttacaaacaattagtagccgttataagctattgttggttgaagaggatcctacgttgagggtgggcttttctt |
6120521 |
T |
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| Q |
210 |
gttgggaatttgagtaattggaccctaatttatggtgg |
247 |
Q |
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|||||| |||| ||| ||| ||||||||| |||||| |
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| T |
6120522 |
gttgggcctttggataagtgggccctaatttgtggtgg |
6120559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 5527121 - 5527068
Alignment:
| Q |
20 |
gagatacatacattatgagcttgtcaagagctctttatatagggtcgaggagac |
73 |
Q |
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| T |
5527121 |
gagatacatatcttgtgagcttgtcaagaactctttatatagggtcaaggagac |
5527068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 26012309 - 26012245
Alignment:
| Q |
10 |
gaagcatagggagatacatacattatgagcttgtcaagagctctttatatagggtcgaggagaccg |
75 |
Q |
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| T |
26012309 |
gaagcatagagagatacgtacattgtgagcttgtcaagaggtgtttatata-ggtcaaggagaccg |
26012245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 18485255 - 18485303
Alignment:
| Q |
12 |
agcatagggagatacatacattatgagcttgtcaagagctctttatata |
60 |
Q |
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| T |
18485255 |
agcatagagagatacataccttgtgagcttgtcaagaactcattatata |
18485303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1482 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1482
Description:
Target: scaffold1482; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 1686 - 1750
Alignment:
| Q |
10 |
gaagcatagggagatacatacattatgagcttgtcaagagctctttatatagggtcgaggagacc |
74 |
Q |
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| T |
1686 |
gaagcatagagagatacataccttgtgagattgtccagagctcattatatagagtctaggagacc |
1750 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 25070972 - 25070911
Alignment:
| Q |
123 |
agattgaatgagcgttaccaaccattggtagcagttatagactattattggtaggagaggat |
184 |
Q |
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||||| ||||| |||||| ||||||| ||||| |||||| ||||||||||| ||||||||| |
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| T |
25070972 |
agattaaatgaccgttacaaaccattagtagccgttatatgctattattggttggagaggat |
25070911 |
T |
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