View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17364_low_14 (Length: 361)
Name: NF17364_low_14
Description: NF17364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17364_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 70 - 304
Target Start/End: Complemental strand, 23533990 - 23533754
Alignment:
| Q |
70 |
attaaataatataatgaagaacatattcgtactagtctacgactcagattttgtttcttatgtaaatggaaagatgaattggaatggnnnnnnnnnnnnn |
169 |
Q |
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| T |
23533990 |
attaaataatataatgaagaacatattcgtactagtctacgactcagattttgtttcttatgcaaatggaaagatgaattggaatgggtgtgtgtgtgtg |
23533891 |
T |
|
| Q |
170 |
nnnnnnn--gtaaatgagttgcgtgaggtaagagagaggggggagggtgattagtgctttaatcgaaaaatttaccctgcatgtggaattgaacccnnnn |
267 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23533890 |
tttatttttgtaaatgagttgcgtgaggtaagagagaagggggagggtgactagtgctttaatcgaaaaatttaccctgcatgtggaattgaaccctttt |
23533791 |
T |
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| Q |
268 |
nnngatattgattttgcttacaaattaaacaagaatt |
304 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
23533790 |
cttgatattgattttgcttacaaattaaacaagaatt |
23533754 |
T |
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