View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17364_low_17 (Length: 296)
Name: NF17364_low_17
Description: NF17364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17364_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 13079033 - 13079295
Alignment:
| Q |
18 |
cttatattcaaactccttaaatccaatactttctactgttgaatatgtagcagggcctctttcacattgcaattctcgttcagacgttcttgtgtctatt |
117 |
Q |
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| T |
13079033 |
cttatattcaaactccttaaatccaatactttctactgttgaatatgtagcagggcctctttcacattgcaattctcgttcagacgttcttgtgtctatt |
13079132 |
T |
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| Q |
118 |
ccttttggatcttttgccttttgtacttgaggttcttcctttgttgtagactcgccaaaaatgaattcatcactctttctttttgcctcttgtcctttca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
13079133 |
ccttttggatcttttgccttttgtacttgaggttcttcctttgttgtagactcgccaaaaataaattcatcactctttctttttgcctcttgtcctttca |
13079232 |
T |
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| Q |
218 |
ccttctttgctttctctatttcatgatcatttgcctctttttcttgcaaacattgttgatctt |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13079233 |
ccttctttgctttctctatttcatgatcatttgcctctttttcttgcaaacattgttgatctt |
13079295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 13074829 - 13075091
Alignment:
| Q |
18 |
cttatattcaaactccttaaatccaatactttctactgttgaatatgtagcagggcctctttcacattgcaattctcgttcagacgttcttgtgtctatt |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
13074829 |
cttatattaaaactccttaaatccaatactttctactgttgaatatgtagaagggcctctttcacattgcaattctcgttcagacgttcttgtatctatt |
13074928 |
T |
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| Q |
118 |
ccttttggatcttttgccttttgtacttgaggttcttcctttgttgtagactcgccaaaaatgaattcatcactctttctttttgcctcttgtcctttca |
217 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||| |||||||| |
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| T |
13074929 |
ccttttaaatcttttgccttttgtacttgaggttcttcctttgttgtagactcaccaaaaataaattcatcacaatttctttttgcctcttatcctttca |
13075028 |
T |
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| Q |
218 |
ccttctttgctttctctatttcatgatcatttgcctctttttcttgcaaacattgttgatctt |
280 |
Q |
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|||| ||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
13075029 |
ccttatttgcttactctatttcatgatcatttgactcattttcttgcaaacattgttgatctt |
13075091 |
T |
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